BAC Information

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BAC

Clone NameMSMg01-099K13
Chromosome18 (Build37)
Map Location 19,029,508 - 19,029,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K13.T7 (MSMg01no099_k13.b1)MSMg01-099K13.TJ (MSMg01no099_k13.g1)
ACCAG315544AG315545
length735689
length of high quality
(start - end)
134 (157 - 290)265 (56 - 320)
definitionCHROMAT_FILE: MSMg01no099_k13.b1 PHD_FILE: MSMg01no099_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:14 2005CHROMAT_FILE: MSMg01no099_k13.g1 PHD_FILE: MSMg01no099_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAGTTCCCACCAGATAATAGAGCGTGCCAGATAGAACCATGA
ATACACAGCCTATGATGAGGTACAGCTCGAGCTCCAATGTATCACAGTTC
ACATAATGTAACAGTGAGACAGTTGAGTGGCATAAGACCACCTCTCCACA
TTACCAGATTTTTCTGCATTTGATACCATGTCAGTTACACATAATTAGAG
CCAAGGTGCACAGAGAAGGAAGGGCAGGCCTTTCTAAGGTCCCTCCGGTA
TATCTGGGAAGCACTTCTCTGGGACACTTATTTGCAGGATCCTAAGTACT
GATGCCCTGTGTTATACACCTTAGATGTTTTCCAAGAGAAGACCGCATAT
TACTGATCTCATACCTTTCCATTCCTTATCACACTTGACTATGGCCACAC
AAATTGTTTGCTTACAACAAACAGTTCTACCTGGACACCCAGTTTATATC
ACGTTTGAAGATTTACTCCCCAGATGCCTTTTCTTCTTACCCTTTATCCT
TCCCCCCCTTTTTGCTTCTTACCGCCTCTTATCTCGCCCCCCTTTTTACC
CCCACCCTTTCCCCTTTTATTTTTTTTTCCCCCCTTCCCCTCGCTCCATT
TATCCCCCCCGTTTTTTACCTTCCCCCCATTTCCTTTCTTATCCTCTCCC
TACTTGTTTTCTCTCTTCCCCCTTATTATCTTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTAGGGACATACTTTACATCACTATTACAAAATATTACCTACTA
CAATCAACATCACTATATGACCACATGTGATAAGAAGGAAAAACAGTCAG
ATATATTTGTGACACATCCATAAATGGCACATGAATTGACTTCCCTATAC
CATGGGATACAAAAGGAAACATCACCACAGTTAAATTTCCAAAAAGGAAT
GTATCCACAAAGTTTGGGGCAGCACCCCATGCCGATACTTTATGGATTAT
TGGCACATCAGACCCTAGTTTTAACTGTTCAGGATTTAATAATACTACAC
ATGATTAAACCCCATTTAATAACCATGAATATACCAGCATTTGGCTGCTA
TTATAACCTCAGCAGCCTAACACCCAAATAACATATTAAGGCACAAGAAA
GGACTATACAATGGTGGAAAACTTGTGGTATCCAACATACCAATGCTAAA
ACCATATATCATTAATGCTTACCACCATTATTTTAGCTACATATTACCAC
ATTCCCAACCTCTTTATTGACCCATGTCTCTATGCCCCTCCCTATATCTT
TAATCCCACCCTATGCCTGACCCACCTCTATGACTGGCGAATATTTATTA
TATTTACCCATGCCTCTACTCTACTGCCCTCTATCACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k13.g1 MSMg01no099_k13.g1 CHROMAT_FILE:
MSMg01no099_k13.g1 PHD_FILE: MSMg01no099_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:15 2005
         (265 letters)



>mm_chr18_19029308_19029972
          Length = 665

 Score =  489 bits (253), Expect = e-143
 Identities = 262/265 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagggacatactttacatcactattacaaaatattacctactacaatcaacatcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagggacatactttacatcactattacaaaatattacctactacaatcaacatcacta 260

                                                                       
Query: 61  tatgaccacatgtgataagaaggaaaaacagtcagatatatttgtgacacatccataaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgaccacatgtgataagaaggaaaaacagtcagatatatttgtgacacatccataaat 320

                                                                       
Query: 121 ggcacatgaattgacttccctataccatgggatacaaaaggaaacatcaccacagttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcacatgaattgacttccctataccatgggatacaaaaggaaacatcaccacagttaaa 380

                                                                       
Query: 181 tttccaaaaaggaatgtatccacaaagtttggggcagcaccccatgccgatactttatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tttccaaaaaggaatgtatccacaaagtttggggcagcaccccatgcagatactttatgg 440

                                    
Query: 241 attattggcacatcagaccctagtt 265
           |||||||||| | ||||||||||||
Sbjct: 441 attattggcataacagaccctagtt 465


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)