BAC Information

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BAC

Clone NameMSMg01-099P16
Chromosome18 (Build37)
Map Location 57,605,865 - 57,606,213
singlet/doubletsinglet
Overlap genenone
Upstream geneGramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099P16.T7 (MSMg01no099_p16.b1)MSMg01-099P16.TJ (MSMg01no099_p16.g1)
ACCAG315789AG315790
length710720
length of high quality
(start - end)
350 (68 - 417)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no099_p16.b1 PHD_FILE: MSMg01no099_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:42 2005CHROMAT_FILE: MSMg01no099_p16.g1 PHD_FILE: MSMg01no099_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAGTTTTATCCTGCTTCATCATTGACGTCTTTCCAGGTTGAAATGTCTGA
ATACATGTGTGATGCTGGTCAAGACTGCACTTCACTGTGGTAATCTACAT
AGGCTATTCGCTGTAGTCCTTGCTGTACTCTGTTCTTGTCTCTTAGCCTA
CACCAGTCTCCAAGAAAGAAAGAACACTCTTCCTTCTTCATGAATGATAC
CAGCCCGTGCGGACATCTAAAAACATAGTGTTTCAACAATTATCTTTAGC
TTGCTTTCTATTGCTGTACTATAGCACCATGACTGCAAGAAACTTAGAGA
GAAAGGGCCTTATTTCAGATTCTCAGTCATAGCTTATCATGAATACAAGT
CCAAGAAGGAACCTGGTTAGAACACCCGAAGGAATGCTTCTTACTGGATT
GCTCTCCATGGCTTGCTCAGCTTGCTTCCTTGTACTACTAAACACCATCT
ACCTAGGTATAGCAGTGCTCACAAAGAGCATTCATTAAAATGGCCCCACA
GATTTGTCTGCATATCAGTCTGATACACACATTTGCTCACGCGATGTTGC
TTCCTTCCCAATGTACTGATTGTGCACTGATCTGACCTACCTTATTCCCC
AGTATTATACTATAAAATCCACTAACCCGCTTGTCAGTTATGTCCTCGCT
ATCTTTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACATCCACTCTGGAA
ATCAGTCTGGCGGCTCCTCAGAAAATTGGACATAGTACTACTAGAGGATC
CCGAAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
ATGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAACAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGCATCATCCTGAG
TGAGGTAACCCAATCACAAAGGAATTCGTACAATATGCACTCATTGACAA
GCGGACATTACCCCAGACACTTATGATACCCAAGATACTAGATCACATTT
GCTACACGCCTGATATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_p16.b1 MSMg01no099_p16.b1 CHROMAT_FILE:
MSMg01no099_p16.b1 PHD_FILE: MSMg01no099_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:42 2005
         (350 letters)



>mm_chr18_57605777_57606526
          Length = 750

 Score =  592 bits (306), Expect = e-173
 Identities = 339/350 (96%), Gaps = 1/350 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattgacgtctttccaggttgaaatgtctgaatacatgtgtgatgctggtcaagactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atcattgacgtctttccaggttgaaatgtctgaatacatgtgtgatgctggtcaagactg 378

                                                                       
Query: 61  cacttcactgtggtaatctacataggctattcgctgtagtccttgctgtactctgttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacttcactgtggtaatctacataggctattcgctgtagtccttgctgtactctgttctt 318

                                                                       
Query: 121 gtctcttagcctacaccagtctccaagaaagaaagaacactcttccttcttcatgaatga 180
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 317 gtctcttagcctacaccagtccccaagagagaaagaacactcttccttcttcatgaatga 258

                                                                       
Query: 181 taccagcccgtgcggacatctaaaaacatagtgtttcaacaattatctttagcttgcttt 240
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 257 taccagcccgtgcggacatctaaaaacatactgtttcaacaattatctttagtttgcttt 198

                                                                       
Query: 241 ctattgctgtactatagcaccatgactgcaagaaacttagagagaaagggccttatttca 300
           |||||||||||||| ||||||||||||||||||||||| |||||||||||  ||||||||
Sbjct: 197 ctattgctgtactaaagcaccatgactgcaagaaacttcgagagaaaggggtttatttca 138

                                                             
Query: 301 gattctcagtcatagcttatcatgaatacaagtccaagaaggaacctggt 350
           |||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 137 gatt-tcagtcatagcttatcatgaagagaagtccaagaaggaacctggt 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)