BAC Information

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BAC

Clone NameMSMg01-100G18
Chromosome18 (Build37)
Map Location 83,620,754 - 83,621,188
singlet/doubletsinglet
Overlap genenone
Upstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
Downstream geneLOC665284, Tshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100G18.T7 (MSMg01no100_g18.b1)MSMg01-100G18.TJ (MSMg01no100_g18.g1)
ACCAG316128AG316129
length779790
length of high quality
(start - end)
468 (102 - 569)435 (143 - 577)
definitionCHROMAT_FILE: MSMg01no100_g18.b1 PHD_FILE: MSMg01no100_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:16 2005CHROMAT_FILE: MSMg01no100_g18.g1 PHD_FILE: MSMg01no100_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNCCCCNNNNNCCCCCCCCCTTTCCCTATCTCTC
TTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGGCCCATACCCAAACATGATAAAAGCAATCTACTGCAA
ACCACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCC
CACTAAAATCAGGGACTAGTCAAGGCTGCCCACTTTCTCCCTACCTATTC
AACATAGTACTTGAAGTCCTAGCCAGATCAATTCGACAACAAAAGGAGAT
CAAGGGGATACCAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATATAAGTAACCCTAATAATTCCACCAGAGAACTC
CTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTC
ATACAAGTCAATGGCCTTTCTCTACAGAAAGAATAAACAGGCTGAGAGAG
AAATTAGGGAAACAACACCCTCTCTTAATAATCACAAATAATATAAAATA
CCTTGGCGTGACTCTAACTAATGAAGTGAAAGATCTGTATAATAAGAACT
TCAAGCCTCTGATGAAAGATATTAAAGATCTCCGAAGATGGAAAGATCTC
CCATGCTCATGGATTGACCAGATCGATATTGTAATAATGGCTATCTTGCC
TAATGCTTTCTACAGATTCTATGCACCCCTCTATCACATTTCAACTTACT
TCTACAAGGAATTAACAAAGTAGTATTTG
NNNNNNNNNCCCCCCCCCCCCNCCNNNNNNCCCCCCCCCCCCCCCTNCCC
CCCCGCCCTTTTTNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGACA
AAGGGAAAGATGCACTCTCCAAGGTGGAGGAGCCAGGCCACTGGCCAGCA
AACAAACTGTAAATATGTGATCTCAAATGCTCTCCATGCTAACTCAGGGA
CATCTTGACATTCTTGGCAAAGATGATGGCTGAAGGACACAGTTCTGGGG
TTCATTTCCCTCAGAAAGGCTTCACACAGAAGAGTGGCTGGGTACCGTGT
AGTCAGATGGGCAGGCTAACTCAGATGCCAGCACTCAGCATGTGTACTGG
CTGGTTTTGTGTGTCAACTTGACACAAGCTGGAGTTACCACAGAGAAAGG
AGCTTCCCTTGAGGAAATGCCTCCATGAGATCCAGCTGCGGGGCATTTTC
TCAATTAGTGATCAAGGGTGGAGGGCCCCTTGTGGGTGGTGCCATCCCTG
GACCGGTAGTTCTGGATTCTATAAGAAAGCAAGCTGAGCAAGGCAGAGGA
AGCAAGCCTGCAAGTAACATCCCTCCATGGCCTCTGCATCACCTCCTGTT
TCCTGACCTGCCTGAATTCCAGTCCTGACTTCCTTTGGTGATGAGCAGCA
ATGGTGAAGTGAAGCTTGAATAAACTCTTTCCTCCCCAACTTGCTTTCTT
GGCCATGATGTTTGTTGAGGTATTAGTAACTCTGATTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_g18.g1 MSMg01no100_g18.g1 CHROMAT_FILE:
MSMg01no100_g18.g1 PHD_FILE: MSMg01no100_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:16 2005
         (435 letters)



>mm_chr18_83620741_83621575
          Length = 835

 Score =  779 bits (403), Expect = 0.0
 Identities = 427/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagacaaagggaaagatgcactctccaaggtggaggagccaggccactggccagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atcagacaaagggaaagatgcactctccaaggtggaggagccaggccactggccagcaaa 389

                                                                       
Query: 61  caaactgtaaatatgtgatctcaaatgctctccatgctaactcagggacatcttgacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caaactgtaaatatgtgatctcaaatgctctccatgctaactcagggacatcttgacatt 329

                                                                       
Query: 121 cttggcaaagatgatggctgaaggacacagttctggggttcatttccctcagaaaggctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cttggcaaagatgatggctgaaggacacagttctggggttcatttccctcagaaaggctt 269

                                                                       
Query: 181 cacacagaagagtggctgggtaccgtgtagtcagatgggcaggctaactcagatgccagc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cacacagaagagtggctgggtgccgtgtagtcagatgggcaggctaactcagatgccagc 209

                                                                       
Query: 241 actcagcatgtgtactggctggttttgtgtgtcaacttgacacaagctggagttaccaca 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 actcagcaggtgtactggctggttttgtgtgtcaacttgacacaagctggagttaccaca 149

                                                                       
Query: 301 gagaaaggagcttcccttgaggaaatgcctccatgagatccagctgcggggcattttctc 360
           |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||
Sbjct: 148 gagaaaggagcttcccttgaggaaatgcctccgtgagatccagctgtggggcattttgtc 89

                                                                       
Query: 361 aattagtgatcaagggtggagggccccttgtgggtggtgccatccctggaccggtagttc 420
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct: 88  aattagtgatcaagggtggagggtcccttgtggatggtgccatccctggactggtagttc 29

                          
Query: 421 tggattctataagaa 435
           |||||||||||||||
Sbjct: 28  tggattctataagaa 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)