BAC Information

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BAC

Clone NameMSMg01-101G07
Chromosome18 (Build37)
Map Location 53,072,099 - 53,072,381
singlet/doubletsinglet
Overlap geneSncaip
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, A730036E13Rik
Downstream geneLOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101G07.T7 (MSMg01no101_g07.b1)MSMg01-101G07.TJ (MSMg01no101_g07.g1)
ACCAG316816AG316817
length668817
length of high quality
(start - end)
293 (49 - 341)46 (206 - 251)
definitionCHROMAT_FILE: MSMg01no101_g07.b1 PHD_FILE: MSMg01no101_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:35 2005CHROMAT_FILE: MSMg01no101_g07.g1 PHD_FILE: MSMg01no101_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTACCTATCGAGAGAGGATCCGCGGAATTCTGTTTTTCATTAAATGAG
TGATTTCTTTCTCAAATTGACACTTACTGGAGAAGGGAGACTCAAATGTA
CTGATTGGGCATCAACTCCTTCCCCCAGAGCCCGGGAGAATACAGACAAG
GTTTTCTTTCACGTCTTTTCCTATTTCTTCCTCCCTTTCTTCTGTTAGGC
ACCTTTTCTTTCCAAATATTTACGAAGCCTCTTCCATAGGTCAGGCACCA
TGCTAGACACTGAGTGTATACAGGTGCTCTCAAGGGTGGTTGATCTCATG
AAGCTCTGACAATCGTTTTTACTCCTACCCTCCTTTGAATCTCTTTACTT
ATGACCTGCCTGAGTTCAGAAACCATGCTTTGCTTTGGGGAAGAATGTGG
TGTTTATGTGGGGGAGGGGAGTGCGCATGTGGTACATGTTCATAAAAGTA
CAATTGTTTTGTGTGTGTGCAGGCATTCGCGCACATGTGTACCCTCGTAT
GCGCACGATGGATGACAGGATGATATGCCGACCCTCAGGAGTAATTTATC
TTCTTTCCTGAGTTTGAGTCTTTCATGTTTACGCACATCACCGACGTTTG
CCCCGCCTATTTGTCCCAGATTATCTTGTTTTCGCCCATTTTTTGCTGAC
TCAACTTTGTATTTCCTG
CATGACATAATCAACCAATACAAATTTGCGTTCCTCGGTGTCCGGGCTGG
ATTTTTTTTCGATGATAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTACACAGTATAGCTG
GAATAGTGACAGAGTACTAGGGCTAGATTTTTGTTATTCCAGTGGGGGTA
GAATACCCTCAGCTGGCATCAGTAAAAACCTCTAACAGTTTGAAAGCCTA
ATGACTGAAGTCACAGAGAAGATTTGCACAGTTACAATTCAGCATCTACC
AAGAAGCCCTCTGCAGACGAGCTTGAGATAATCGCCTGTGCTGATCTCAT
CCTCGTGAGCTTCGTAGGAAACATATCTTTTTTTTATTCCACACGTAAGT
GCCTTGCCGGTCTACTGTATACATCTTTCCTCCTCACTATCTGTCTGGTG
TTAGTACACCTTATTAATAACCAGATGAAGAAAACCTTCTAGAAGGTTTA
CACTTCCGGTTTCTTGCTGGACCCCGATGACTGATAAAATCTGACACTTC
ACTGCATTCCTGCATTATTTCCCTGACCATCTTGCTTCAAGTTACTCTTT
TGCGTCTGTTCCTACCCCAGCATCTTTTATCGGATTAGGGTCCCCTTCTG
CGCGGTGCATGTTCCTCCTGATTCCACTCGAATTCCTTGCCGTTACGGGT
ATTCTCTTGCCCCTCGGGGTCCGCGGCGGGGGCTGCGCTCAGCCCCTTTT
TTGGTCTGTCTTAGTGTTTCTTTTTTTATTAATTTTTCTGGGTTCGCGCC
TGTATTTACTCGGCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_g07.b1 MSMg01no101_g07.b1 CHROMAT_FILE:
MSMg01no101_g07.b1 PHD_FILE: MSMg01no101_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:35 2005
         (293 letters)



>mm_chr18_53072070_53072762
          Length = 693

 Score =  524 bits (271), Expect = e-153
 Identities = 283/293 (96%), Gaps = 10/293 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatttctttctcaaattgacacttactggagaagggagactcaaatgtactgattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agtgatttctttctcaaattgacacttactggagaagggagactcaaatgtactgattgg 253

                                                                       
Query: 61  gcatcaactccttcccccagagcccgggagaatacagacaaggttttctttcacgtcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 252 gcatcaactccttcccccagagcccgggagaatacagacaaggttttc----------tt 203

                                                                       
Query: 121 tcctatttcttcctccctttcttctgttaggcaccttttctttccaaatatttacgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcctatttcttcctccctttcttctgttaggcaccttttctttccaaatatttacgaagc 143

                                                                       
Query: 181 ctcttccataggtcaggcaccatgctagacactgagtgtatacaggtgctctcaagggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctcttccataggtcaggcaccatgctagacactgagtgtatacaggtgctctcaagggtg 83

                                                                
Query: 241 gttgatctcatgaagctctgacaatcgtttttactcctaccctcctttgaatc 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gttgatctcatgaagctctgacaatcgtttttactcctaccctcctttgaatc 30


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)