Query= MSMg01no103_j01.b1 MSMg01no103_j01.b1 CHROMAT_FILE:
MSMg01no103_j01.b1 PHD_FILE: MSMg01no103_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:31 2005
(392 letters)
>mm_chr18_54880589_54881380
Length = 792
Score = 648 bits (335), Expect = 0.0
Identities = 370/385 (96%), Gaps = 11/385 (2%)
Strand = Plus / Plus
Query: 9 gaattctacccattgtc-ttggggataggaggtgggcgtggggactagggggactcccta 67
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctaccca-tggctttggggataggaggtgggcgtggggactagggggactcccta 260
Query: 68 gcaccctgaagggtaagtgtctgaagac-aaatgaggaagactaatacttagcatgtgat 126
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gcaccctgaagggtgagtgtctgaagacaaaatgaggaagactaatacttagcatgtgat 320
Query: 127 actggggagccctcctccttgtccctcactagaat------aaaaaaaaaaaacccactt 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 actggggagccctcctccttgtccctcactagaataaaaaaaaaaaaaaaaaacccactt 380
Query: 181 ccttgccaggagccaggaaggtgtttcttagcaatcacacctctaaatagaatgtaatta 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgccaggagccaggagggtgtttcttagcaatcacacctctaaatagaatgtaatta 440
Query: 241 cgaaggaaattaacttcacagccaaagactgcgttgtcatgatgatttagaagatgggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaaggaaattaacttcacagccaaagactgcgttgtcatgatgatttagaagatgggga 500
Query: 301 agggatgttttctgagcaatctctaatctctctctctctctctccctctctctctctctc 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 agggatgttttctgagcaatctctaatctctctctctctctctctctctctctctctctc 560
Query: 361 tctctctctctctctctctctctct 385
|||||||||||||| |||| |||||
Sbjct: 561 tctctctctctctc-ctct-tctct 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space: 299889
Effective search space used: 299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_j01.g1 MSMg01no103_j01.g1 CHROMAT_FILE:
MSMg01no103_j01.g1 PHD_FILE: MSMg01no103_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:32 2005
(237 letters)
>mm_chr18_55025774_55026410
Length = 637
Score = 410 bits (212), Expect = e-119
Identities = 231/238 (97%), Gaps = 4/238 (1%)
Strand = Plus / Minus
Query: 1 ctcagaattaatggagaaatgatgtgtttctgagaagcacacgcctgcgctcttggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 336 ctcagaattaatggagaaatgatgtgtttctgagaagcacacgcctgtgctcttggtgtg 277
Query: 61 ttttacttactctgactgcctctctttctctctagtctcatgctaaagcttatattaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttttacttactctgactgcctctctttctctctagtctcatgctaaagcttatattaaaa 217
Query: 121 tctacatactaaagctcaaa-tctgtgtttgtgtctctgtgtatgtgttcgtgtgtgtgt 179
|||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 216 tctacatactaaagct-aaagtctgtgtttgtgtctctgtgtatgtgtt--tgtgtgtgt 160
Query: 180 gtctgtgtgtttgtgtctgtgtgtgtttgtgtgtatctgtctttgtgttgtgtttgtg 237
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 159 gtctgtgtgtttgtatctgtgtgtgtttgtgtgtatctatctttgtgttgtgtttgtg 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space: 143184
Effective search space used: 143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
