Query= MSMg01no104_k12.b1 MSMg01no104_k12.b1 CHROMAT_FILE:
MSMg01no104_k12.b1 PHD_FILE: MSMg01no104_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:59 2005
(671 letters)
>mm_chr18_17697304_17698374
Length = 1071
Score = 948 bits (490), Expect = 0.0
Identities = 514/522 (98%)
Strand = Plus / Minus
Query: 5 gaattcaggctggattctatatgtggcaaagaccttatggtgttttatgatattatttta 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaattcaggctggattttatatgtggcaaagaccttatggtgttttatgatattatttta 463
Query: 65 aatttagtatattgaagatacaaatttataacaccttttcagacacttaaggctatttga 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct: 462 aatttagtatattgaagatacaaatttataacaccttttaagacacttaaggccattgga 403
Query: 125 aagtactattcaatttataaaattcatcttaaaccaaaattccattttcttcctgtcctg 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aagtactactcaatttataaaattcatcttaaaccaaaattccattttcttcctgtcctg 343
Query: 185 tatttgtacatgatattctaaaactgatctatggttcaaatcgaaaagacaatgttcctt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tatttgtacatgatattctaaaactgatctatggttcaaatcgaaaagacaatgttcctt 283
Query: 245 ttggttataattagaaagataattaaacaattcaaatattccaagcagaattgaacaaaa 304
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 282 ttgggtataattagaaagataattaaacaattcaaatattccaagcagaattaaacaaaa 223
Query: 305 tatttcagattcaccatcatattttgattttataataaaatattcttattttttaaattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tatttcagattcaccatcatattttgattttataataaaatattcttattttttaaattt 163
Query: 365 tttataaatctcaaaaattatctttgtatgtggttcagtttaaacccatgtaaatcttca 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tttataaatctcaaaaattacctttgtatgtggttcagtttaaacccatgtaaatcttca 103
Query: 425 tatactaatgttcatgaatttagcaagattttaattatgtcaaattactctattttaact 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tatactaatgttcatgaatttagcaagattttaattatgtcaaattactctattttaact 43
Query: 485 tgtctcttacttgaacatgccaattctacttaactgtacatt 526
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 tgtctcttacttgaacatgccaattctacttaactgtacatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_k12.g1 MSMg01no104_k12.g1 CHROMAT_FILE:
MSMg01no104_k12.g1 PHD_FILE: MSMg01no104_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:59 2005
(639 letters)
>mm_chr18_17573855_17574894
Length = 1040
Score = 1176 bits (608), Expect = 0.0
Identities = 632/644 (98%), Gaps = 9/644 (1%)
Strand = Plus / Plus
Query: 1 ccaatatgttttaaatcaagcctacaagagctcacttggttgtctccatcttggagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaatatgttttaaatcaagcctacaagagctcacttggttgtctccatcttggagagaa 260
Query: 61 ccctcatcccaccacatgctggacttctgcagaataaaatgaatgctctttacgtttgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctcatcccaccacatgctggacttctgcagaataaaatgaatgctctttacgtttgca 320
Query: 121 tactatttgagtttggggcatcatttttcagtgaacaatggaccattgcatatcttttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactatttgagtttggggcatcatttttcagtgaacaatggaccattgcatatcttttaa 380
Query: 181 aatccacttctgaaaatggtgatgcattcctttaattcctgtctgtagaagcagagacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatccacttctgaaaatggtgatgcattcctttaattcctgtctgtagaagcagagacag 440
Query: 241 aattctgggaatcaaagacatgcctgttgaagaaggtgaatggctgactacatagca--- 297
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 atttctgggaatcaaagacatgcctgttgaagaaggtgaatggctgactacata-catag 499
Query: 298 --cccatgttaatttcatctcttttagcagcaattgtaagtaggtttattccctttacac 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcccatgttaatttcatctcttttagcagcaattgtaagtaggtttattccctttacac 559
Query: 356 tgactctttcagagtggatctgttctctactttctttggtgatcctctttgccaactctg 415
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 tgactctttcagagtggatctgttctctactttctttggtgatcctctttgtcaactctg 619
Query: 416 gattggagagtgtattattaaaccagtggaatgcaatggcagctcagtatcttcaatggg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gattggagagtgtattattaaaccagtggaatgcaatggcagctcagtatcttcaatggg 679
Query: 476 catcttaccctcctttagctcagctgtgctccatagcacacagccattcgtttcaaagca 535
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catcttaccctcctctagctcagctgtgctccatagcacacagccattcgtttcaaagca 739
Query: 536 tggttgcaagtggggcaatagtcaattgctaaaaagtgagcaaaaaaaaaaaaaattgca 595
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 740 tggttgcaagtggggcaatagtcaattgctaaaaagtgagcaaaaaaaaaaa---ttgca 796
Query: 596 aagtacatattcaaggaaagttgatttttacatactatctagtc 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aagtacatattcaaggaaagttgatttttacatactatctagtc 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space: 647870
Effective search space used: 647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
