Query= MSMg01no105_j18.b1 MSMg01no105_j18.b1 CHROMAT_FILE:
MSMg01no105_j18.b1 PHD_FILE: MSMg01no105_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:18 2005
(476 letters)
>mm_chr18_16871427_16872305
Length = 879
Score = 868 bits (449), Expect = 0.0
Identities = 471/479 (98%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 1 actgaagcggttccactatatctgtctcgctctctacattacaaacttgcctgaattcct 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaagcggttccactatatctgtttcgctctctacattacaaacttgcctgaattcct 260
Query: 61 ttcattgcaaacatgtg--aaaaaaaaag-tcacttgctcatccttcagtcatgtcagag 117
||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttcattgtaaacatgtgaaaaaaaaaaagttcacttgctcatccttcagtcatgtcagag 320
Query: 118 gctttgccgatgtcattgagaaagattgtatatacaacaaaataatcagtaacaaatgag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttgccgatgtcattgagaaagattgtatatacaacaaaataatcagtaacaaatgag 380
Query: 178 atgtttgcctcagatagcctcacaccctgtcaaaatccggtccctctaatatctgggaga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtttgcctcagatagcctcacaccctgtcaaaatccggtccctctaatatctgggaga 440
Query: 238 cattggtcatggttctaaatagcagacaaagctagacaactccaaatgtatggttttgcc 297
|| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactggccatggctctaaatagcagacaaagctagacaactccaaatgtatggttttgcc 500
Query: 298 ttttgctcatggccaggccagaccagggaggcctccctccttgaatggcttcttgtgttc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgctcatggccaggccagaccagggaggcctccctccttgaatggcttcttgtgttc 560
Query: 358 accccgttcccagcctatgttctcatctcattagaatttctggttcctctggtctcacag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accccgttcccagcctatgttctcatctcattagaatttctggttcctctggtctcacag 620
Query: 418 agttccctgcaccttcttttgtattggacaaaagatggtaatttacttctaattaacgg 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttccctgcaccttcttttgtattggacaaaagatggtaatttacttctaattaacgg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 879
Length adjustment: 10
Effective length of query: 466
Effective length of database: 869
Effective search space: 404954
Effective search space used: 404954
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_j18.g1 MSMg01no105_j18.g1 CHROMAT_FILE:
MSMg01no105_j18.g1 PHD_FILE: MSMg01no105_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:18 2005
(241 letters)
>mm_chr18_17036175_17036818
Length = 644
Score = 387 bits (200), Expect = e-112
Identities = 232/248 (93%), Gaps = 11/248 (4%)
Strand = Plus / Minus
Query: 1 tttgtttagctctgtacaccatttttaatggggttatctgaatttctg----ccccccag 56
||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct: 519 tttgtttagctctgtgccccatttttaatggggttatctgaatttctggagt----ccag 464
Query: 57 cttctggagctttgtaaatgaagaaaatatctaataaaaaaattggaaaaaaaaagaaaa 116
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 463 cttctggagctttgtaaatgaagaaaatatctaataaaaatattggaaaaaaaaagaaaa 404
Query: 117 gcacagttatcactacaaacaataataatgaaatacaattattctacccaaatatgtatc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gcacagttatcactacaaacaataataatgaaatacaattattctacccaaatatgtatc 344
Query: 177 aataatatgattcctaattgaaaaaaaaaa---gaaaatacaacttctaatgggctcaat 233
||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 343 aataaaatgattcctaattgaaaaaaaaaaaaagaaaatagaacttctaatgggctcaat 284
Query: 234 gctaggga 241
||||||||
Sbjct: 283 gctaggga 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 644
Length adjustment: 9
Effective length of query: 232
Effective length of database: 635
Effective search space: 147320
Effective search space used: 147320
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
