Query= MSMg01no106_p06.b1 MSMg01no106_p06.b1 CHROMAT_FILE:
MSMg01no106_p06.b1 PHD_FILE: MSMg01no106_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:06 2005
(627 letters)
>mm_chr18_71221286_71222312
Length = 1027
Score = 1118 bits (578), Expect = 0.0
Identities = 614/632 (97%), Gaps = 12/632 (1%)
Strand = Plus / Minus
Query: 1 aggttactcagggaagaaaatcagaaatatccctt-----acagatatcagaatttattt 55
||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 783 aggttactcagggaagaaaatcagaaata-----tggaagacagatatcagaatttattt 729
Query: 56 tttacttttttttttttttgatttttcgagacagggtttctgtgtgtagccctggctgtc 115
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tttac--ttttttttttttgatttttcgagacagggtttctgtgtgtagccctggctgtc 671
Query: 116 ctggagctcactctgtagaccagcctggccttgaagtcagatatctgcctgcctctgcct 175
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ctggagctcactctatagaccagcctggccttgaagtcagatatctgcctgcctctgcct 611
Query: 176 cccaagtgctgggattaaacacgtgcaccaccactgcctggctaaagattggggtttttt 235
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cccaagtgctgggattaaagacgtgcaccaccactgcctggctaaagattggggtttttt 551
Query: 236 ggtttttagatatcagaatttataacatcatgggacagacacaagaaagctggaatgaga 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggtttttagatatcagaatttataacatcatgggacagacacaagaaagctggaatgaga 491
Query: 296 ttggcatccagtgtctcaataaatgataatctgaggtaatggatcccaagcttggtagta 355
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 490 ttggcatccagtgtctcaataaatgataacctgaggtaatggatcccaagcttggtagta 431
Query: 356 gaagtttatgttaatgtgtaatgttccccataggcctccatggttgaatgcttcatttta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 430 gaagtttatgttaatgtgtaatgttccccataggcctccatggttgaatgcttcacttta 371
Query: 416 gctcttgctgctgttttgaaaggttgtggacaattcagtggaggatccttgatgaaggat 475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gctcttgctgctgtgttgaaaggttgtggacaattcagtggaggatccttgatgaaggat 311
Query: 476 gtaggtcactggaagatgggcattgagactttacagccctgcctgctccagtttttgtgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtaggtcactggaagatgggcattgagactttacagccctgcctgctccagtttttgtgc 251
Query: 536 actggctaattcctgagagtggaaataatatgaccaaccaacctctgttcctgcctccat 595
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 250 actggctaattcctgagagtggaaacaatatgaccaaccaacctctgttcctgcctccat 191
Query: 596 ggcttccctgactgctgcaatcttcaccacca 627
||||||||||||||||||||||||||||||||
Sbjct: 190 ggcttccctgactgctgcaatcttcaccacca 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_p06.g1 MSMg01no106_p06.g1 CHROMAT_FILE:
MSMg01no106_p06.g1 PHD_FILE: MSMg01no106_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:06 2005
(528 letters)
>mm_chr18_71154904_71155831
Length = 928
Score = 975 bits (504), Expect = 0.0
Identities = 522/528 (98%)
Strand = Plus / Plus
Query: 1 ctaggaattgaacctaggagtttgtttctgctgggtcagtactctaatactaactataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggaattgaacctaggagtttgtttctgctgggtcagtactctaatactaactataac 260
Query: 61 cccaattgggatattagcaggaagacagactgacactgagagagagagatgcacacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 cccaattgggatattagcaggaagacagactgacactgagagagagagatgcatacacat 320
Query: 121 gcatgcatcatattaatatatgaatatttagctaacttagataaaagaatatcttatttt 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatgcaacatattaatatatgaatatttagctaacttagataaaagaatatcttatttt 380
Query: 181 taaaatttttgggtaaaaaatgtcttagagaagttcataaactgttttgtatcctaggaa 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagatttttgggtaaaaaatgtcttagagaagttcataaactgttttgtatcctaggaa 440
Query: 241 aatatatttattatgtgcagaccatgacacacaaccctctaagactgatagttatttgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatatatttattatgtgcagaccatgacacacaaccctctaagactgatagttatttgta 500
Query: 301 aacatgatatctagggctggtacaaagacagtactcagctaggctaaatgcttcatagaa 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 aacatgatatctagggctggtacagagacagtactcagctaggctaaatgcttcatagaa 560
Query: 361 aacattcaaagacttatctttattttgataaagggaaaacaaaaccctctatttgaggtt 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 aacattcaaagacttatctttattttgatcaagggaaaacaaaaccctctatttgaggtt 620
Query: 421 ccccagatgctcctatgatgttccggctctgcaggcttttagtagtgaactcccttgaag 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccagatgctcctatgatattccggctctgcaggcttttagtagtgaactcccttgaag 680
Query: 481 gtcttatcatgtgcaaattaaaataaaaccctaggtttagccatgtgt 528
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttatcatgtgcaaattaaaataaaaccctaggtttagccatgtgt 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
