BAC Information

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BAC

Clone NameMSMg01-108I20
Chromosome18 (Build37)
Map Location 61,541,274 - 61,677,776
singlet/doubletdoublet
Overlap genePpargc1b, LOC667675, 4933429F08Rik
Upstream geneLOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279
Downstream geneCsnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108I20.T7 (MSMg01no108_i20.b1)MSMg01-108I20.TJ (MSMg01no108_i20.g1)
ACCAG321969AG321970
length715713
length of high quality
(start - end)		600 (38 - 637)539 (68 - 606)
definitionCHROMAT_FILE: MSMg01no108_i20.b1 PHD_FILE: MSMg01no108_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:27 2005CHROMAT_FILE: MSMg01no108_i20.g1 PHD_FILE: MSMg01no108_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,541,274 - 61,541,868)(61,677,251 - 61,677,776)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGAATTCAA
GACAATCTGCGAACTGAGTCTAGACAAGGCCCAGACAGGACGGGGCCTCT
TTCACACATCATCCTTTCTCATTAAGCAGATTTGGGGGTGGGAGTCACGA
GTCACACATTCCTGCCAAGTTCAGGCACCAGTGTCCTTACTGGGTAAGTC
ATCTCCACATCCTGGGGCCTTGGACTTTTCTGTGGATGGAGGTGGAAATA
TTCACAAGGATGTATATTCTAGACGTGAGATGGAATTTCCGAGCAATATG
CTACTGGGGCTAACACTAAAAGAGGGACAATAATTATTATGGCAATAACC
ATCATCCCTGTTACATTTATTGCAGGTTTACTTTATCTAACCAGTCCATA
AGGTACCGGGTGGGTCCAGGCCATGAGAGAAGTAATTGCTCTCCTGAACA
AGGACTCCAGTCAGAACTAAGATGAGAACCCTAGCCTTTCCTGTTGGCAA
ATCCTCACGAGCTTCCTCCACCCCCTAAGGCCTGGGGATGAGCTGTGCAG
ACCACAGATAGCAACACTCATTCTGTCCTGCTGTGTGGCCCTGGGAAAAC
CGAGTCATCCAAAAATCACCTTCCCTGGGGAACCTTCCCAAGGCCTGCCT
CTCCACTCCAGAGCAGCCTGCAGCTAGCAGTTTTTTGTTTGAGATCTTGC
CACTCTTCCTCATGC

ATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAAGAGGAGTTTGAACAAGTCTATAAAGTCTAC
TGTGCCAACTATGACCAGGCCCTGCTGCTGGTCAAGGCGTACCAGAAGGA
GCCAGAACTGCAGAAGGAGATCCAGGGCATCATCGAAGCTGCCATGTGAG
TACCATGTCTGGCGACAGTTCAAGTCTTGATCCTGCTGGGGTCTGCCCAG
GCTGCTTGGGGCCTGTGTCAGCAGCCAGGCCTCTCTCTCAGTCAGGAAGG
CCTTGCTGCCAGTCAATGTTCAAGTCTCAGTGGTCTCAAGCAAGGCTCCA
AGCCTCCTTATGTTCCTGTGTTTCCTGTCAGTTTGGATTTCTATGGATAG
CTCTTTTGCATGTACAAGTAGTTACAAATATACAATCTTATTTCCTGCCT
TCCTGCCTCCCTTCCTCCTTCCCTCTTTTTCTCCATTCCTCCCTCTCTCC
TTCCCTCCCTCTTTCCCTTCTTCCTTCCCTTTCTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTTCCTCACTCCCCCCCCTCATACTTCTTTTTTCTTTTTTCTTTTC
CCTCCCCCTCCTACTTTTTATATCTAGTTAGCTCCCTCCCTCCCCACCAC
TCTCTATTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_i20.b1 MSMg01no108_i20.b1 CHROMAT_FILE:
MSMg01no108_i20.b1 PHD_FILE: MSMg01no108_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:27 2005
         (600 letters)



>mm_chr18_61541069_61542068
          Length = 1000

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaagacaatctgcgaactgagtctagacaaggcccagacaggacggggcctcttt 65
           |||||||||  |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 206 gaattcaagggaatctgggaactgagtctagacaaggcccagacaggaccgggcctcttt 265

                                                                       
Query: 66  cacacatcatcctttctcattaagcagatttgggggtgggagtcacgagtcacacattcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacacatcatcctttctcattaagcagatttgggggtgggagtcacgagtcacacattcc 325

                                                                       
Query: 126 tgccaagttcaggcaccagtgtccttactgggtaagtcatctccacatcctggggccttg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgccaagttcaggcaccagtgtccttactgggtaagtcatctccacatcctggggccttg 385

                                                                       
Query: 186 gacttttctgtggatggaggtggaaatattcacaaggatgtatattctagacgtgagatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gacttttctgtggatggaggtggaaatattcacaaggatgtatattctagacgtgagatg 445

                                                                       
Query: 246 gaatttccgagcaatatgctactggggctaacactaaaagagggacaataattattatgg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaatttccgagcaatatgctactggggctaacactaaaagagggacaataattattatgg 505

                                                                       
Query: 306 caataaccatcatccctgttacatttattgcaggtttactttatctaaccagtccataag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caataaccatcatccctgttacatttattgcaggtttactttatctaaccagtccataag 565

                                                                       
Query: 366 gtaccgggtgggtccaggccatgagagaagtaattgctctcctgaacaaggactccagtc 425
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaccgggtgggtccaggccatgagggaagtaattgctctcctgaacaaggactccagtc 625

                                                                       
Query: 426 agaactaagatgagaaccctagcctttcctgttggcaaatcctcacgagcttcctccacc 485
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 agaactaagatgagaaccctagcctttcctgttggcaaatcctaacgagcttcctccacc 685

                                                                       
Query: 486 ccctaaggcctggggatgagctgtgcagaccacagatagcaacactcattctgtcctgct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ccctaaggcctggggatgagctgtgcagaccacagatagcaacactcattctgtcctgct 745

                                                                  
Query: 546 gtgtggccctgggaaaaccgagtcatccaaaaatcaccttccctggggaaccttc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtgtggccctgggaaaaccgagtcatccaaaaatcaccttccctggggaaccttc 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no108_i20.g1 MSMg01no108_i20.g1 CHROMAT_FILE:
MSMg01no108_i20.g1 PHD_FILE: MSMg01no108_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:27 2005
         (539 letters)



>mm_chr18_61677203_61678141
          Length = 939

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagaggagtttgaacaagtctataaagtctactgtgccaactatgaccaggccctgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caagaggagtttgaacaagtctataaagtctactgtgccaactatgaccaggccctgctg 515

                                                                       
Query: 61  ctggtcaaggcgtaccagaaggagccagaactgcagaaggagatccagggcatcatcgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctggtcaaggcgtaccagaaggagccagaactgcagaaggagatccagggcatcatcgaa 455

                                                                       
Query: 121 gctgccatgtgagtaccatgtctggcgacagttcaagtcttgatcctgctggggtctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gctgccatgtgagtaccatgtctggcgacagttcaagtcttgatcctgctggggtctgcc 395

                                                                       
Query: 181 caggctgcttggggcctgtgtcagcagccaggcctctctctcagtcaggaaggccttgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caggctgcttggggcctgtgtcagcagccaggcctctctctcagtcaggaaggccttgct 335

                                                                       
Query: 241 gccagtcaatgttcaagtctcagtggtctcaagcaaggctccaagcctccttatgttcct 300
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 334 gccagtcaatgttcaagtctcagtggtctcaagcaaggctccaagcttccttgtgttcct 275

                                                                       
Query: 301 gtgtttcctgtcagtttggatttctatggatagctcttttgcatgtacaagtagttacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 274 gtgtttcctgtcagtttggatttctatggatagctcttttgcatgtacaagtagttacag 215

                                                                       
Query: 361 atatacaatcttatttcctgccttcctgcctcccttcctccttccctctttttctccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 214 atatacaatcttatttcctgccttcctgcctcccttcctccttccctctttctctccatt 155

                                                                       
Query: 421 cctccctctctccttccctccctctttcccttcttccttccctttctccttccttccttc 480
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cctccctctcttcttccctccctctttcccttcttccttccctttctccttccttccttc 95

                                                         
Query: 481 cttccttccttccttccttccttccttccttccttccttccttcct 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94  cttccttccttccttccttccttccttccttccttccttccttcct 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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