Query= MSMg01no109_p03.b1 MSMg01no109_p03.b1 CHROMAT_FILE:
MSMg01no109_p03.b1 PHD_FILE: MSMg01no109_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:20 2005
(324 letters)
>mm_chr18_19243773_19244497
Length = 725
Score = 551 bits (285), Expect = e-161
Identities = 312/321 (97%), Gaps = 3/321 (0%)
Strand = Plus / Plus
Query: 6 gaattcttggctatttct-tgactttcgtttttctaaagaa-gtaaaatatttttatgaa 63
|||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 gaattcttggctatatcactgactttcgtttttctaaagaatgtaaaatatttttatgaa 265
Query: 64 tttataaatgtagaaaaagcaaaacaaaaactaagatcaaggttattagggagaagaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttataaatgtagaaaaagcaaaacaaaaactaagatcaaggttattagggagaagaata 325
Query: 124 tcagtagattacagtctctggaactcgatattctcataactggtcaacttttatatataa 183
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 326 tcagtagattacagtctctggaacttgatattctcataactggtcaacttatatatataa 385
Query: 184 ataatgtaaatacagtctaatataatgagatggttgaatgacagctacagatacatttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 386 ataatgtaaatacagtctaatataatgagatggttgaatgacagctacagatatatttca 445
Query: 244 ataaaataagaaaaaattgaatgcactcttttctattaaaaaactcaaaaattttaactt 303
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 ataaaataagaaaaaattgaatgcactcttttctaa-aaaaaactcaaaaattttaactt 504
Query: 304 gaaccattcaggaaaatcttt 324
|||||||||||||||||||||
Sbjct: 505 gaaccattcaggaaaatcttt 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space: 225540
Effective search space used: 225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_p03.g1 MSMg01no109_p03.g1 CHROMAT_FILE:
MSMg01no109_p03.g1 PHD_FILE: MSMg01no109_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:20 2005
(248 letters)
>mm_chr18_19330905_19331556
Length = 652
Score = 429 bits (222), Expect = e-125
Identities = 244/252 (96%), Gaps = 4/252 (1%)
Strand = Plus / Minus
Query: 1 cctttggaactcacccaccattcttttca-ttttttatatctaaataatttcattatgat 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 452 cctttggaactcacccaccattcttttcatttttttatatctaaataatttcattatgat 393
Query: 60 atttgcttttatcatcagttatagtaattatgttaagaatgatttttgcttattgtgtct 119
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 392 atttgcttttatcatcagttatagtaattatgttaagaatgttttttgcttattgtgcct 333
Query: 120 ggcatattaaa-atcttatgttagagctataaatattaat--gttatcatagaccttaca 176
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 332 ggcatattaaacatcttatgttagagctataaatattaatatgttatcatagaccttaca 273
Query: 177 gtcatggagatttattgggaaaaggaggatctgtgcttttaaccaagatgcacatgtttt 236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 272 gtcatggagatttattgggaaaaggaggatctgtgcttttaaccaagatgaacatgtttt 213
Query: 237 ccaaaatgttat 248
|||||| |||||
Sbjct: 212 ccaaaacgttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 652
Length adjustment: 9
Effective length of query: 239
Effective length of database: 643
Effective search space: 153677
Effective search space used: 153677
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
