Query= MSMg01no110_n01.b1 MSMg01no110_n01.b1 CHROMAT_FILE:
MSMg01no110_n01.b1 PHD_FILE: MSMg01no110_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:31 2005
(563 letters)
>mm_chr18_27005481_27006442
Length = 962
Score = 1036 bits (536), Expect = 0.0
Identities = 554/560 (98%), Gaps = 1/560 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactgtgctccttgtctattcataatgtgaaatataacagactttggagtttta 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 762 ggaattcactgtgctccttgtctattcataatgtgaaatataacagactttggagtttca 703
Query: 64 tatacctgtgtgaacagcagctcaacccacccccaagcacaggttctactgtgattctgt 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tatacgtgtgtgaacagcagctcaacccacccccaagcacaggttctactgtgattctgt 643
Query: 124 tagtcactttctgcactctgcccctcatctgcaggtgtgagaggtatcatactgcagtga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tagtcactttctgcactctgcccctcatctgcaggtgtgagaggtatcatactgcagtga 583
Query: 184 gtctgggaaatcctcctgtggggaaattatccagccctggcaagcttcaaaagagagtct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtctgggaaatcctcctgtggggaaattatccagccctggcaagcttcaaaagagagtct 523
Query: 244 tgtttgtgggatcttctgtacagtgtcagaattccctctgcaggctggttctaataaact 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtttgtgggatcttctgtacagtgtcagaattccctctgcaggctggttctaataaact 463
Query: 304 cattacattaagatcaaaatgactgaccagctgttcccttccctgaagtatttgcatttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cattacattaagatcaaaatgactgaccagctgttcccttccctgaagtatttgcatttt 403
Query: 364 aaaaggtgagggaaaaaaatcccataaaaccaagaggccaagtttctgttacctaaaacc 423
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 402 aaaaggtgaggg-aaaaaatcccataaaaccaagaggccatgtttctgttacctaaaacc 344
Query: 424 agtgatctatgatctatgcgaaaacagtgtatgtgaggagatggggaagggtatggactc 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agcgatctatgatctatgcgaaaacagtgtatgtgaggagatggggaagggtatggactc 284
Query: 484 atgactgtctcctcacaatctggattctggaatgatatactttctaaaattctccaagca 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 283 atgactgtctcctcacaatctggattctggaatgatatactttctaaaattctccgagca 224
Query: 544 ttttcaagagtctctgaggg 563
||||||||||||||||||||
Sbjct: 223 ttttcaagagtctctgaggg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 962
Length adjustment: 10
Effective length of query: 553
Effective length of database: 952
Effective search space: 526456
Effective search space used: 526456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_n01.g1 MSMg01no110_n01.g1 CHROMAT_FILE:
MSMg01no110_n01.g1 PHD_FILE: MSMg01no110_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:31 2005
(536 letters)
>mm_chr18_26923434_26924369
Length = 936
Score = 1006 bits (520), Expect = 0.0
Identities = 532/536 (99%)
Strand = Plus / Plus
Query: 1 tcaggcaatttgtttcttctaattttcaagcaagaatgccaagttctgaaatgtctggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggcaatttgtttcttctaattttcaagcaagaatgccaagttctgaaatgtctggag 260
Query: 61 tttgtgcatctgtacattagatttagcaactcacactcagaaacttgaatcctgagctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgcatctgtacattagatttagcaactcacactcagaaacttgaatcctgagctgc 320
Query: 121 tgactgcaatacactttctcctatacttaaatccttctcacagcctcaccctccaccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgactgcaatacactttctcctatacttaaatccttctcacagcctcaccctccaccaga 380
Query: 181 ctttatttgagtcacattgggacagtgaaataccttctgcacacacaggtagactctatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttatttgagtcacattgggacagtgaaataccttctgcacacacaggtagactctatc 440
Query: 241 tggaaactcttggagtaatctccctcatcctatttgaatctcacatgtgtcacaggccca 300
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaactcttggagtaatctttctcatcctatttgaatctcacatgtgtcacaggccca 500
Query: 301 gaggacaatagctatgaacatgattgtctctacaaatcaatattgacaacaagctcctcc 360
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gaggacaatagctatgaatatgattgtctctaaaaatcaatattgacaacaagctcctcc 560
Query: 361 atcttcaggcttctcacctgatttttcatgctgtatctttgtatttcgtggaataataat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttcaggcttctcacctgatttttcatgctgtatctttgtatttcgtggaataataat 620
Query: 421 acacaggctggatgtgcaaacacaggctcattcattcttaaagaccatcatattggtgaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaggctggatgtgcaaacacaggctcattcattcttaaagaccatcatattggtgaa 680
Query: 481 cagtgcctactcttagctaagattatcctttctctttgggcattttgtttgttttg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgcctactcttagctaagattatcctttctctttgggcattttgtttgttttg 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
