BAC Information

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BAC

Clone NameMSMg01-110O03
Chromosome18 (Build37)
Map Location 71,974,489 - 71,974,809
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O03.T7 (MSMg01no110_o03.b1)MSMg01-110O03.TJ (MSMg01no110_o03.g1)
ACCAG323695AG323696
length706718
length of high quality
(start - end)		661 (46 - 706)629 (90 - 718)
definitionCHROMAT_FILE: MSMg01no110_o03.b1 PHD_FILE: MSMg01no110_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005CHROMAT_FILE: MSMg01no110_o03.g1 PHD_FILE: MSMg01no110_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACACAGAACTAGCAACTTTTTTTGTTGGTTCCCCTTATGGGATG
AACATGAGCTTGACTTGAGCAGACAGACAGCAGGAAGGAGGTACCTTTCA
GATGCAGACACTAGTGAGATATTTTATCAAAAGTGAAAAACTTGAATGAG
TCACTTGGGGAAAAATATTGTCTACTGTGAATTAAATTCAAGCTTCTCAG
CTAAAATTAGGAATTTGAGAAACATGCAAATTTGACTCGCACTTTGACAG
CTTTCCAATATTGAGAGTCATTTCGATGGCTATGCTGGTAATAGTAACAA
ATGACTTTTTCTATCATGATACATGTCAACAGTTGGAAGTCCTGACTAAA
ATAGTATATACTATTCCAAATTACCATTGACTGATGTGACAAAATCATAA
ATCATTCATTCAAAGTAGAAGATGGGCCAGATGCATTTTTTATAAGATAG
CACAGAATGTTTATTGATACCATGTCAGATTCTGCATTACAACTAACTGT
CAAGAAACTAGTTGTTGAGAGTCAGCATAGTGTTAAAGTTCTACTTCTAC
AATTATCTGAAAAGTCTATCAAAATTTGCTTTTGACTACTGTAAATGTTA
GAGCTTTGAGACAAAGTCTTCCCAAATGGAAGTGTTCCAGTTCTGAATGG
GAATAT

NAAATCAACTNNNNNACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTATTTCAA
TTAGAAAAAAATAAAAAGCAAATAAGCAAGAGGAAAAGGCTGTTGCTGTG
AATTTAAATTTTTTAAGTCTAGAAACTTTCTATAAGTTTTACACTTTGAT
TAAAATAAATGTATTTTTAAAATTTTTTATTAGATATTTTCTTCATTTAC
ATTTCAAATGCTATACTCTCCCCCTGCCCTTCTCCACTATCCACCCACTC
CCACTTCTTGGCCCTGGCATTCCCTGTACTGGGGCATATAAAGTTTGCAA
TACCAACAGGCCTCTCTTCCCAATGATGGCCAACTAGGCCATCTTCTGCT
ACATATGCAGCTAGAGACACGAGCTCTGGGGGTACTGGTTAGTTCATATT
GTTGTTCCACCTATAGGATTGAAGACCCCTTCAGCTCCTTGGGTACTTTC
TCTAGCTCCTACATTGGGGGCCCTGTGTTCCATCCTGTAGCTAACTGTGA
GCATCCACTTATGCATTTGCCAGGCACTGGCATAGCCTCACAAGAGACAG
CTATATCAGGGTCCTTTCAGCATAATCTTACTGGCATATGCAATAGTGTC
TGTGTTTGGTGGCTAGTTATGGGATGCACCCCTGGTTGGGGCAGGTAAAT
GTATTATTTTTAATGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o03.b1 MSMg01no110_o03.b1 CHROMAT_FILE:
MSMg01no110_o03.b1 PHD_FILE: MSMg01no110_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:36 2005
         (661 letters)



>mm_chr18_71974489_71975549
          Length = 1061

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacacagaactagcaactttttttgttggttccccttatgggatgaacatgagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattccacacagaactagcaactttttttgttggttccccttatgggatgaacatgagc 262

                                                                       
Query: 65  ttgacttgagcagacagacagcaggaaggaggtacctttcagatgcagacactagtgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgacttgagcagacagacagcaggaaggaggtacctttcagatgcagacactagtgaga 202

                                                                       
Query: 125 tattttatcaaaagtgaaaaacttgaatgagtcacttggggaaaaatattgtctactgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattttatcaaaagtgaaaaacttgaatgagtcacttggggaaaaatattgtctactgtg 142

                                                                       
Query: 185 aattaaattcaagcttctcagctaaaattaggaatttgagaaacatgcaaatttgactcg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aattaaattcaagcttctcagctaaaattaggaatttgagaaacatgcaaatttgactcg 82

                                                                       
Query: 245 cactttgacagctttccaatattgagagtcatttcgatggctatgctggtaatagtaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  cactttgacagctttccaatattgagagtcatttcgatggctatgctggtaatagtaaca 22

                                
Query: 305 aatgactttttctatcatgat 325
           |||||||||||||||||||||
Sbjct: 21  aatgactttttctatcatgat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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