Query= MSMg01no113_p02.b1 MSMg01no113_p02.b1 CHROMAT_FILE:
MSMg01no113_p02.b1 PHD_FILE: MSMg01no113_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:31 2005
(611 letters)
>mm_chr18_88868083_88869093
Length = 1011
Score = 1123 bits (581), Expect = 0.0
Identities = 596/601 (99%)
Strand = Plus / Minus
Query: 11 atgaggtcacaaaatgaagaagacacaaaattgtgtgggtatggaattggggatggattt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 atgaggtcacaaaatgaagaagacacaaaattgtgtgggtatggaattggggatggattt 752
Query: 71 ggaatgagatttgaaaagggccatgatcatttacagaatataatgcctgtgttttttatt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggaatgagatttgaaaagggccatgatcatttacagaatataatgcctgtgttttttatt 692
Query: 131 taaaaagaatgaaagaaaggaaaaatatggtttatttttgaattacttatgaaggcagaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taaaaagaatgaaagaaaggaaaaatatggtttatttttgaattacttatgaaggcagaa 632
Query: 191 tgaaaaataaggacccctactctacctgaactatttaagtgtgaatcatcaagatgagaa 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgaaaaataaggacccctactctacctgaactatttaagtgtgaatcatcaagatgagaa 572
Query: 251 tgaatccaagggaacccagtatcacaaatctcttaggactctgatagtcagaaaatgcac 310
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 tgaatccaagggaacccactatcacaaatctcttaggactctgatcgtcagaaaatgcac 512
Query: 311 cttaggaaaatcagaacccattggagaaacatgatggtataaaattgatttggatggatc 370
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 511 cttaggaaaatcagaacccattggagaaacatgatggtataaaattgatttgaatggatc 452
Query: 371 atttgaaaaactaaattagatccttataaacaaaaacatactaaacaaatgtgaagttag 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atttgaaaaactaaattagatccttataaacaaaaacatactaaacaaatgtgaagttag 392
Query: 431 tgaaatctgtacatttacagcaagtttatattctctaaaaatattacaggcacacagaaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgaaatctgtacatttacagcaagtttatattctctaaaaatattacaggcacacagaaa 332
Query: 491 taccaacttgataggccaaagcatagtgggcaaaacatttcaaagatgtcacaactgtaa 550
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 taccaacttgataggccgaagcatagtgggcaaaacatttcaaagatgtcacaactgtaa 272
Query: 551 atattcctaatgttttgtgtgttttaaatatcttttgatatgataattttgagtgtgaga 610
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atattcctattgttttgtgtgttttaaatatcttttgatatgataattttgagtgtgaga 212
Query: 611 t 611
|
Sbjct: 211 t 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_p02.g1 MSMg01no113_p02.g1 CHROMAT_FILE:
MSMg01no113_p02.g1 PHD_FILE: MSMg01no113_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:31 2005
(614 letters)
>mm_chr18_88815242_88816255
Length = 1014
Score = 1091 bits (564), Expect = 0.0
Identities = 602/616 (97%), Gaps = 4/616 (0%)
Strand = Plus / Plus
Query: 1 tatgtgtcatagttaaagtttaaaaaaaaatcaggcaatacctataggaattacgcactc 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 201 tatgtgtcatagttaaagtttaaaaaataatcaggcaatacctataggaattacacactc 260
Query: 61 agaagaataactccatcttcataatgctttagtcagacatgtgtttatcagcctcagtgg 120
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |||
Sbjct: 261 agaagaataactccatctgcataatgctttagtcagac--gtgtttatcagccccaatgg 318
Query: 121 actatctacattggttttatttgttgtagatgcaatcccaacactagttcatgagtaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 actatctacattggttttatttgttgtagatgcaatcccaacactagttcatgagtaaaa 378
Query: 181 tgtatgccctattaaaaggtttttaaagaactcctataaagaataaatattctcatttta 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtattccctattaaaaggtttttaaagaactcctataaagaataaatattctcatttta 438
Query: 241 ccctcccacaattgcactattcaggacccattaggaagactctaaatgccatatagaata 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 ccctcccacaattgcactattcaggacccattaggaagtctctaaatgccatatagaata 498
Query: 301 caattaatttgttccacttgttagtaaagctatggtcttagtagaagcaggaaggatttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caattaatttgttccacttgttagtaaagctatggtcttagtagaagcaggaaggatttt 558
Query: 361 aaataccaacttattagactgcacttatgtgtacttcacacacac--cccaatacatctc 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 aaataccaacttattagactgcacttatgtgtacttcacacacacaccccaatacatctc 618
Query: 419 agctaagtttcaaccatgcttggaaacaatttgatggaagcatcctaagaatgaagagca 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 619 agctaagtttcaaccatgcttggaaacaatttgatggaagcatcctaagaatgaggagca 678
Query: 479 gaacctgaaagagcttctgtaagtacatacctgttggatttgatgaacagcacggggaga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaacctgaaagagcttctgtaagtacatacctgttggatttgatgaacagcacggggaga 738
Query: 539 tcaggataccaaagcagagtatgtcaaaaggctagaaatgttgtcaacagcaggagagga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcaggataccaaagcagagtatgtcaaaaggctagaaatgttgtcaacagcaggagagga 798
Query: 599 gggatgttatatataa 614
|| || ||||||||||
Sbjct: 799 ggtatattatatataa 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
