BAC Information

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BAC

Clone NameMSMg01-115F08
Chromosome18 (Build37)
Map Location 84,540,912 - 84,657,069
singlet/doubletdoublet
Overlap geneZfp407
Upstream geneLOC665284, Tshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115F08.T7 (MSMg01no115_f08.b1)MSMg01-115F08.TJ (MSMg01no115_f08.g1)
ACCAG326990AG326991
length731699
length of high quality
(start - end)
369 (45 - 413)356 (81 - 436)
definitionCHROMAT_FILE: MSMg01no115_f08.b1 PHD_FILE: MSMg01no115_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005CHROMAT_FILE: MSMg01no115_f08.g1 PHD_FILE: MSMg01no115_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,540,912 - 84,541,276)(84,656,731 - 84,657,069)
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAATTTGAACAAAACATGGATGTTTAACCAAAATTTTTCATTA
TGTCTATTATTTGCAAGCAAACAAAGGAAGCAGGAAGTGGAGAAAAGGAA
GGCAGAACAACTAGTTAACAAGATAATAGCAATGAAATTAATGGCTCTCC
ACTGCGGGTTCATGACATGGCTTTGCCATCTACCTAGAAAATGAAGAGAC
ACAAACAAACAAACCACAGAACCTAACTCAAATGGTTATCAAACACAAAT
CCAGATGAGGAATTTTAAATGTATTTTATTTCTCTTTAAACAAATGGTAA
CTGTCTGACTCCATCCCAGGATATGTTATCCATCTGCCATTCTAAAACTG
AAAGTAACAGAAGAGCCTCTTATGAGCCATGGATTTCCCTAAAGGCCAAC
CCAAGGTCTGGCCCCTAACAGGTACCAGGTGGAGGGAGGCACTGCTGTAG
ATACTCTTTCTTACTTTAGGTGGAAGAGAAAGTCTGAGTGCACTTAACCC
TCACAGGTACACCGCAGCTCCCGAACCACTCAGGTCCCACAGCTGCGACT
TTTCTCCTGAAACTACCAGATAGAAACAAATTATCCCCAAATTACCTTAA
TCGATGCCGCTCTAGCCATCTGAAACATGTCCCGTATTAGTATCTGATAT
GCCCACCGAAAGTCCGTTGCTACCCGTGCCC
CCTACTCTACGATGAAGTGATAGGCCTGGCGGCGCCTGTTTCCCAAXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTACTTTAGTTAGAAAAG
AATTACAAATATTGTTCTTTAGCATATATTTTATTTCTTCTGTAACTATA
TCTAATATAGTTCTTGAAAGATTGACAGTGATGGCCTTCTGGTCCATGGC
CTTTCTTGGTACGTAGCCTGATTTTTCTTGCATGTGATAAACCGTGACTA
AAAGCAACTTGGGGAATAAAAGGTTTACTTCCCCCCACACTTGCAGGTAA
CAGCCCTTCCCTGAGGAAGGTCAGCACAGGCACTCAGGCAGGAGCAGAGT
CAGAAATCACGGACGGAAGTTGCTGATTTGCTTTCTTCCCATGGCCTGCT
CACATTGCTTTCTTTGTTTCTTCACCCTGATTTTATGTGTACGAGTGTTT
TGTCGGCATGCCTTTCTCTGGGCCGCATGCATGCCTGATGCCTGTGGGTC
CAGAACAGGGCGTCGGATCCCCTTGGAATTGAAGTCACAGAGGTATGGTC
TACTGCGTGAGCGCTGATAATTGACCATGCGTCTTCAGAAGTGCTCTCGG
TGCCCTTCTCCGAGCCATGTCTCCATCCTGTCTGCTTGCTTTCTCTAATA
TCCCAATACCACCTGTTACTCCCGATTGGTTTTGCTCACCATCCATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_f08.b1 MSMg01no115_f08.b1 CHROMAT_FILE:
MSMg01no115_f08.b1 PHD_FILE: MSMg01no115_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:15 2005
         (369 letters)



>mm_chr18_84540708_84541476
          Length = 769

 Score =  659 bits (341), Expect = 0.0
 Identities = 359/365 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttaaatttgaacaaaacatggatgtttaaccaaaatttttcattatgtctatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttaaatttgaacaaaacatggatgtttaaccaaaatttttcattatgtctatt 264

                                                                       
Query: 65  atttgcaagcaaacaaaggaagcaggaagtggagaaaaggaaggcagaacaactagttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgcaagcaaacaaaggaagcaggaagtggagaaaaggaaggcagaacaactagttaa 324

                                                                       
Query: 125 caagataatagcaatgaaattaatggctctccactgcgggttcatgacatggctttgcca 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 caagataatagcaatgaaattaatgggtctccactgcgggttcatgacatggctttgcca 384

                                                                       
Query: 185 tctacctagaaaatgaagagacacaaacaaacaaaccacagaacctaactcaaatggtta 244
           ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 385 tctacatagaaaatgaagagacacaaacaaacaaaccacagaaagtaactcaaatggtta 444

                                                                       
Query: 245 tcaaacacaaatccagatgaggaattttaaatgtattttatttctctttaaacaaatggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaacacaaatccagatgaggaattttaaatgtattttatttctctttaaacaaatggt 504

                                                                       
Query: 305 aactgtctgactccatcccaggatatgttatccatctgccattctaaaactgaaagtaac 364
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 505 aactgtctgactccatcccaggatatgttatccatctgccattccaaaactgaaagtagc 564

                
Query: 365 agaag 369
           |||||
Sbjct: 565 agaag 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_f08.g1 MSMg01no115_f08.g1 CHROMAT_FILE:
MSMg01no115_f08.g1 PHD_FILE: MSMg01no115_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:15 2005
         (356 letters)



>mm_chr18_84656731_84657486
          Length = 756

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattactttagttagaaaagaattacaaatattgttctttagcatatattttatttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cattactttagttagaaaagaattacaaatattgttctttagcatatattttatttcttc 280

                                                                       
Query: 61  tgtaactatatctaatatagttcttgaaagattgacagtgatggccttctggtccatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tgtaactatatctaatatagttcttgaaagattgacagtgatggccttctggtccatggc 220

                                                                       
Query: 121 ctttcttggtacgtagcctgatttttcttgcatgtgataaaccgtgactaaaagcaactt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctttcttggtatgtagcctgatttttcttgcatgtgataaaccgtgactaaaagcaactt 160

                                                                       
Query: 181 ggggaataaaaggtttacttccccccacacttgcaggtaacagcccttccctgaggaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggggaataaaaggtttacttccccccacacttgcaggtaacagcccttccctgaggaagg 100

                                                                       
Query: 241 tcagcacaggcactcaggcaggagcagagtcagaaatcacggacggaagttgctgatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  tcagcacaggcactcaggcaggagcagagtcagaaatcacggacggaagttgctgatttg 40

                                                  
Query: 301 ctttcttcccatggcctgctcacattgctttctttgttt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ctttcttcccatggcctgctcacattgctttctttgttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)