Query= MSMg01no117_g02.b1 MSMg01no117_g02.b1 CHROMAT_FILE:
MSMg01no117_g02.b1 PHD_FILE: MSMg01no117_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:55 2005
(471 letters)
>mm_chr18_83089226_83090096
Length = 871
Score = 880 bits (455), Expect = 0.0
Identities = 467/471 (99%)
Strand = Plus / Plus
Query: 1 gagtttggcttctgacagtcttctctgcaccctctagctgggggttttggtgcttagact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gagtttggcttctgacagtcttctctgcaccctctagctgggggttttggtggttagact 260
Query: 61 gtatttacttcacaggagatgtgtgttctgagatgattcaggagggcatccacctgcctt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttacttcacaagagatgtgtgttctgagatgattcaggagggcatccacctgcctt 320
Query: 121 gtcaccattgacctccattcctgaccagtgtggagctgtgctgccccagggccccagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaccattgacctccattcctgaccagtgtggagctgtgctgccccagggccccagagc 380
Query: 181 ctctggacactgttgtcttctcagatggcttcattatccttcatttcctggtttccctgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggacactgttgtcttctcagatggcttcattatccttcatttcctggtttccctgt 440
Query: 241 ttagaggaaagaagcatacacatacgcttggtcacatgtgtgcccccaagccatgcaccg 300
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaggaaagaagcagacacatacgcttggtcacatgtgtgcccccaagccatgcaccg 500
Query: 301 tgcactctgtaggttgtgcactgcccggagtttgaacagtggaactgtgccttgccttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcactctgtaggttgtgcactgcccggagtttgaacagtggaactgtgccttgccttgg 560
Query: 361 acacacgtcacactgagatgaccggtgacttagtatttctgtaaccctctgagaaaaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacacgtcacactgagatgaccggtgacttagtatttctgtaaccctctgagaaaaatg 620
Query: 421 ccatcatctgttgataattatatcctcaagatccagatggatcttccagtc 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatcatctgttgataattatatcctcaagatccagatggatcttccagtc 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_g02.g1 MSMg01no117_g02.g1 CHROMAT_FILE:
MSMg01no117_g02.g1 PHD_FILE: MSMg01no117_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:55 2005
(552 letters)
>mm_chr18_83226532_83227483
Length = 952
Score = 725 bits (375), Expect = 0.0
Identities = 384/389 (98%), Gaps = 4/389 (1%)
Strand = Plus / Minus
Query: 1 ttggctggcagaattgcggttcccctaatagaaggttcaagcaaccccatagctggtata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttggctggcagaattgcggttcccctaatagaaggttcaagcaaccccatagctggtata 330
Query: 61 tgtagcgaatttctctccattcaaaggaagaagtagaacacaggattggggagaagctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtagcgaatttctctccattcaaaggaagaagtagaacacaggattggggagaagctgg 270
Query: 121 ctttcctgatggacaggaaacatttagatttgttccctggaattgcagaattcaaaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctttcctgatggacaggaaacatttagatttgttccctggaattgcagaattcaaaagtt 210
Query: 181 catagagggcatacacacacacacacacacacacacacacacacacatacatacctgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 209 catagagggcatacacacacacacacacacacacacacacacacacacacatacctgtgt 150
Query: 241 catacatacatacacatacctgtgttatacatatatacatacacacacctgtgccataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 catacatacatacacatacctgtgttatacatatatacatacacacacctgtgccataca 90
Query: 301 tacatatacacacctgtgtcatacatacacacacac----acctgtgtcatacatacata 356
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 89 tacatatacacacctgtgtcatacatacacacacacacatacctgtgtcatacatacata 30
Query: 357 cacacacctgtgtcatacatacacacaca 385
|||||||||||||||||||||||||||||
Sbjct: 29 cacacacctgtgtcatacatacacacaca 1
Score = 103 bits (53), Expect = 4e-26
Identities = 80/93 (86%), Gaps = 8/93 (8%)
Strand = Plus / Minus
Query: 460 acacatacctgtgttatacatacatacatacacatacctgtgttatacatacacacatac 519
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct: 163 acacatacctgtgt----catacatacatacacatacctgtgttatacatata----tac 112
Query: 520 atacacatacctatgtcatacatacttatacac 552
||||||| |||| || ||||||||| |||||||
Sbjct: 111 atacacacacctgtgccatacatacatatacac 79
Score = 58.7 bits (30), Expect = 1e-12
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 193 acacacacacacacacacacacacacacacacac 226
|||||||||||||||||||||||||||| |||||
Sbjct: 765 acacacacacacacacacacacacacacgcacac 732
Score = 58.7 bits (30), Expect = 1e-12
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 194 cacacacacacacacacacacacacacacacaca 227
||||||||||||||||||||||||||||| ||||
Sbjct: 766 cacacacacacacacacacacacacacacgcaca 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 168
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 5
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
