BAC Information

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BAC

Clone NameMSMg01-118K05
Chromosome18 (Build37)
Map Location 49,479,871 - 49,480,116
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118K05.T7 (MSMg01no118_k05.b1)MSMg01-118K05.TJ (MSMg01no118_k05.g1)
ACCAG329460AG329461
length698703
length of high quality
(start - end)
246 (74 - 319)571 (77 - 647)
definitionCHROMAT_FILE: MSMg01no118_k05.b1 PHD_FILE: MSMg01no118_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:33 2005CHROMAT_FILE: MSMg01no118_k05.g1 PHD_FILE: MSMg01no118_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAGCCGCGG
AATTCTCTCTCTCTCTGATAGAATGTTAAGGCTTCATTCATCAAAACCCA
GATAAAGGAAGTTTTATAACCCTTCCTATTCGTAAGTTTCCCAATGTTTG
ATGAATTTGTGTTTAGGAAGTAATCTAGAGGTTACCCTTATATCCATAGC
ACTTTCTTCTCATTTCAACCGAAAGAGAGTAGAATGTATGAATGCATTCT
GATTAGTGTGCATGTAATCCTGGCTGGTGTTGGAAACCTTGAACCCAGCT
TAATTCTTTTGTCTTGGGATTTTATTTATAAGTCTCTCTGGTTTTAATTC
TGTACTTCTTGTAAAGCATTAACCACTTTTTATTAAACTACAGGAAGGAT
GGGGCAAGGGAGGGCACTGGGAACAAGGGAGGGCACTGGGAATGAGAGAG
GGCACTGGGAACGAGGGAGGGCGTAGGGTGGAAGAGTTCTGAATAGAGGT
TATGGACATGATTCTGTGCTCCAAGTGTTTCCTTAGTCACTCTTCAACAA
GCACTCAAGAAGGATATTGTGCTACTTTGGCAAACAGTGCAGACTGATGT
CTCCAAGTGAATGCTGTGCTTTGTAAGAAACCCTGATGGTCAGTTAAAGG
TATCTGGGTTTCTTAAGAGAGTGTTTGATCTGAAGCCAGAGGAGGCAT
NACACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGCACTACCAGAGGATC
CCACAATACCTCTCCTGGGCATATATTCACAAGATGTCCCAACCGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGGTGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATTTACACAATGGAGTATTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATAGACGTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCAAACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_k05.b1 MSMg01no118_k05.b1 CHROMAT_FILE:
MSMg01no118_k05.b1 PHD_FILE: MSMg01no118_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:33 2005
         (246 letters)



>mm_chr18_49479671_49480316
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttaaggcttcattcatcaaaacccagataaaggaagttttataacccttcctattcgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 446 tgttaaggcttcattcatcaaaacccagataaaggaagttttataacccttcctattcat 387

                                                                       
Query: 61  aagtttcccaatgtttgatgaatttgtgtttaggaagtaatctagaggttacccttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagtttcccaatgtttgatgaatttgtgtttaggaagtaatctagaggttacccttatat 327

                                                                       
Query: 121 ccatagcactttcttctcatttcaaccgaaagagagtagaatgtatgaatgcattctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccatagcactttcttctcatttcaaccgaaagagagtagaatgtatgaatgcattctgat 267

                                                                       
Query: 181 tagtgtgcatgtaatcctggctggtgttggaaaccttgaacccagcttaattcttttgtc 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggtgtgcatgtaatcctggctggtgttggaaaccttgaacccagcttaattcttttgtc 207

                 
Query: 241 ttggga 246
           ||||||
Sbjct: 206 ttggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)