BAC Information

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BAC

Clone NameMSMg01-119I06
Chromosome18 (Build37)
Map Location 21,306,866 - 21,307,421
singlet/doubletsinglet
Overlap geneGm944
Upstream geneDsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
Downstream geneLOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119I06.T7 (MSMg01no119_i06.b1)MSMg01-119I06.TJ (MSMg01no119_i06.g1)
ACCAG330113AG330114
length703701
length of high quality
(start - end)
204 (46 - 249)556 (74 - 629)
definitionCHROMAT_FILE: MSMg01no119_i06.b1 PHD_FILE: MSMg01no119_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:41 2005CHROMAT_FILE: MSMg01no119_i06.g1 PHD_FILE: MSMg01no119_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAA
TTCTGATTTTCTCTTCTCAAGTTCTGAGATGATAAGGATGTGTGCCAAAA
TACCAGGCTTTTCTTTTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTACTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTACAGGGTTTCTCTGT
ATAGTCCATGCTGGCCTGGAACTTACTTTGCATACTAGGTTGGTTCCAAA
CTTAGATCATTAGCCTCTGTTTTTCGAGCACCGGGATTACAGGAGTGAGC
CACCACGTCCGGCTCCCATTCTATTTTTGAGATAAAGTTTGAGCTATATA
GCTGTAGCTTTTTGGCAACCTACTATGAGATGACAAAAATTTATTTGGTG
ATAGTTCAATACATATAATTTGAACATTATCATCTTCAATTACACTCTCT
CATTGCGCTTTCAGTACTTCCAAAGCTATTACGAAGAAGAGACCTTTCTA
AAAGAACGAGGCAGAAGAGGCAGAAGGATCTTTTGACGCTAAAATAGGTA
AGGAATCTTATGGTGTGTACCTAGGCCTTTTTTTTCTATCAACGCCTTCT
AATGAATCTTATTTAAAAACAAGCCTGCCTGGAATAAATAACCATCTCAG
AGA
CATTGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXGTTTATCGTGTCGTAGGTGGCGTCGGG
TGAATGCAATGAAGACACTGAAGTTTACAACATCACCCTGTGCACCGGGG
ATGAACTCACCCTAATGGGGCAGGCAGAAATCCTTTATGCAAAGACCTTC
AAGGAGAAGTCACGTCTCAACACCATCTTCAAAAAGATTGGGAAGCTCAA
TTCCATCAGCAAGCTGGGGAAAGGCAAAATGCCCTGCCTCATTTGCATGA
ATCACCGGACCAATGAAAGCATCAGCCTTCCATTCCAGTGCAAGGGCAGA
TTTAGCACCCGAAGTCCCATGGAACTTCAGATGCAGGAAGGGGAACACAC
CATCCGAAACATCGTGGAGAAGACTCGACTCCCCGTGAATGTGACAGTGC
CCAGTCCCCCACCCAGAAATCCCTATGACCTCCACTTCATTAGAGAGGGG
CACCGCTACAAGTTTGTGAACATCCAGACCAAGACAGTGGTGGTTTGTTG
TGTGCTGCGCAACAACAAGATCCTCCCCATGCACTTCCCTTTGCACTTGA
CTGTCCCCAAGTTCAGTCTCCCGGAACACCAGGTGAAGGGAGACATGTGG
TCAGAAACACTAGTCTATCACTGGCTTGCTATCTGCCCAGAGCATTTTGA
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_i06.g1 MSMg01no119_i06.g1 CHROMAT_FILE:
MSMg01no119_i06.g1 PHD_FILE: MSMg01no119_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:41 2005
         (556 letters)



>mm_chr18_21306666_21307621
          Length = 956

 Score = 1060 bits (548), Expect = 0.0
 Identities = 554/556 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttatcgtgtcgtaggtggcgtcgggtgaatgcaatgaagacactgaagtttacaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gtttatcgtgtcgtaggtggcgtcgggtgaatgcaatgaagacactgaagtttacaacat 697

                                                                       
Query: 61  caccctgtgcaccggggatgaactcaccctaatggggcaggcagaaatcctttatgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caccctgtgcaccggggatgaactcaccctaatggggcaggcagaaatcctttatgcaaa 637

                                                                       
Query: 121 gaccttcaaggagaagtcacgtctcaacaccatcttcaaaaagattgggaagctcaattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gaccttcaaggagaagtcacgtctcaacaccatcttcaaaaagattgggaagctcaattc 577

                                                                       
Query: 181 catcagcaagctggggaaaggcaaaatgccctgcctcatttgcatgaatcaccggaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 catcagcaagctggggaaaggcaaaatgccctgcctcatttgcatgaatcaccggaccaa 517

                                                                       
Query: 241 tgaaagcatcagccttccattccagtgcaagggcagatttagcacccgaagtcccatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 516 tgaaagcatcagccttccattccagtgcaagggcagatttagcacccgaagtcccctgga 457

                                                                       
Query: 301 acttcagatgcaggaaggggaacacaccatccgaaacatcgtggagaagactcgactccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 acttcagatgcaggaaggggaacacaccatccgaaacatcgtggagaagactcgactccc 397

                                                                       
Query: 361 cgtgaatgtgacagtgcccagtcccccacccagaaatccctatgacctccacttcattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cgtgaatgtgacagtgcccagtcccccacccagaaatccctatgacctccacttcattag 337

                                                                       
Query: 421 agaggggcaccgctacaagtttgtgaacatccagaccaagacagtggtggtttgttgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaggggcaccgctacaagtttgtgaacatccagaccaagacagtggtggtttgttgtgt 277

                                                                       
Query: 481 gctgcgcaacaacaagatcctccccatgcacttccctttgcacttgactgtccccaagtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gctgcgcaacaacaagatcctccccatgcacttccctttgcacttgactgtccccaagtt 217

                           
Query: 541 cagtctcccggaacac 556
           ||| ||||||||||||
Sbjct: 216 cagcctcccggaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)