BAC Information

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BAC

Clone NameMSMg01-120F19
Chromosome18 (Build37)
Map Location 90,399,820 - 90,400,154
singlet/doubletsinglet
Overlap genenone
Upstream geneCd226, Dok6, LOC383320, LOC620693
Downstream geneEif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120F19.T7 (MSMg01no120_f19.b1)MSMg01-120F19.TJ (MSMg01no120_f19.g1)
ACCAG330749AG330750
length703710
length of high quality
(start - end)
243 (75 - 317)623 (78 - 700)
definitionCHROMAT_FILE: MSMg01no120_f19.b1 PHD_FILE: MSMg01no120_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005CHROMAT_FILE: MSMg01no120_f19.g1 PHD_FILE: MSMg01no120_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXNCACTTCGGAGGTGAGCCGCN
GGAATCNTTGTTACCTCAGGGACCCATTTTTTAATGGGGCTATTCGATTT
TCTGGAGCCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCC
TATCCAATTTGGGATAGGTAAAGATCCTTTGCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTAT
TAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCTCGTATCCATATCTTCCAGGCTTTTCCCTACT
TTCTCCTCTATACCCCCCAGCGTCTCTGGTTTTATGTGGAATTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCTCC
TTCTTCTACATGATGACTACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGGAAAAAGATCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTGGT
CTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGTT
TCTTTTTACAGCTTTAGGNCAGGCATGTTGATTCCCCCCGAGGTTCTTTT
ATN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATCTCTAACTTCTGTTGTTT
TATATTTGTTTTGAGTATTCAGGTTTTCTTAATACACACTTTGAAAGTTT
TTCTAGTTCTTTGAAAGATATGCTTGGGATTTTGAAAATACTTTGTGTTT
TGTTTGCTTTGTTTTTATTAAAATTAGATATATCAATACAATACTTCTGG
TCCACAGTTTTACCTCCCTCTACTCCTCTTAGATCCCACCTACCTCCTCT
TTTCACCAGGTCCACTTTCCCTCTATTTCTTCTTTAGAAAAGAACAGTTT
TCCAAGAGACAACAGCCAAACAGGACAATATTGTTAAGTTTGTATGCTGC
TCTAAATTGTATTTATTACATATTTAGACAATGTTAATAATTTTAATATA
TAAAATAAGTTTTCATTTTTTTACTTTCTTCAATGTCTTATACTTTCCAG
TATATAACACATAAACTCCACAGTTAAATTTATTCTTAAGAAAATACCTA
ATTAAAAAAATTATAAAAAAATTTATTCTTAAGATTTTATCTTTTTGCTT
TTATTCTAAATAAGATTTTTATCAGTTATGTTTTAGATTGTTTTATATTA
ATATTAAGAAACACTTCCAATTTGTGTATTATTATCTTATAACCTGCATT
TACATAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_f19.g1 MSMg01no120_f19.g1 CHROMAT_FILE:
MSMg01no120_f19.g1 PHD_FILE: MSMg01no120_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:46 2005
         (623 letters)



>mm_chr18_90399820_90400842
          Length = 1023

 Score =  625 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatctctaacttctgttgttttatatttgttttgagtattcaggttttcttaatacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 agtatctctaacttctgttgttttatatttgttttgagtattcaggttttcttaatacac 276

                                                                       
Query: 61  actttgaaagtttttctagttctttgaaagatatgcttgggattttgaaaatactttgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 actttgaaagtttttctagttctttgaaagatatgcttgggattttgaaaatactttgtg 216

                                                                       
Query: 121 ttttgtttgctttgtttttattaaaattagatatatcaatacaatacttctggtccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttttgtttgctttgtttttattaaaattagatatatcaatacaatacttctggtccacag 156

                                                                       
Query: 181 ttttacctccctctactcctcttagatcccacctacctcctcttttcaccaggtccactt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 155 ttttacctccctctactcctctcagatcccacctacctcctcttttcaccaggtccagtt 96

                                                                       
Query: 241 tccctctatttcttctttagaaaagaacagttttccaagagacaacagccaaacaggaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 95  tccctctatttcttctttagaaaagaacagttttccaagagacaacagacaaacaggaca 36

                                              
Query: 301 atattgttaagtttgtatgctgctctaaattgtat 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  atattgttaagtttgtatgctgctctaaattgtat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)