Query= MSMg01no120_l19.b1 MSMg01no120_l19.b1 CHROMAT_FILE:
MSMg01no120_l19.b1 PHD_FILE: MSMg01no120_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:17 2005
(645 letters)
>mm_chr18_54664399_54665443
Length = 1045
Score = 1232 bits (637), Expect = 0.0
Identities = 643/645 (99%)
Strand = Plus / Plus
Query: 1 acacaggtcaggctcatttttctataatttgataaccattcatcaccatgtttacaaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacaggtcaggctcatttttctataatttgataaccattcatcaccatgtttacaaccg 260
Query: 61 ctggttttatttatttatattcaccttgagcgatcacttaacttctctggacttcatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggttttatttatttatattcaccttgagcgatcacttaacttctctggacttcatttt 320
Query: 121 caactctttgaaaggtgggatagtacctacattgcagggatgtagagagaattaaatgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caactctttgaaaggtgggatagtacctacattgcagggatgtagagagaattaaatgcc 380
Query: 181 tcgaaaaaaacaaaaacacttggcatcggacccactctacaaatttcaagtccctgcagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgaaaaaaacaaaaacacttggcatcggacccactctacaaatttcaagtccctgcagc 440
Query: 241 ctgccttgtgcaatatgaaaaccttgcttgatcacacaggaaagaaacatttgaaaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgccttgtgcaatatgaaaaccttgcttgatcacacaggaaagaaacatttgaaaaatc 500
Query: 301 ttggcaatagacttagatttatgtttttaaatgcggctcacattcaagccattgccagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcaatagacttagatttatgtttttaaatgcggctcacattcaagccattgccagct 560
Query: 361 ctgagagtgctcattgcagtgtatctgactactttctttctcctttttactcccccctaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagagtgctcattgcagtgtatctgactactttctttctcctttttactcccccctaa 620
Query: 421 aaggatgctggagtcatttatttccttgcagaagcttcgtggatgtctttgtaagcctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggatgctggagtcatttatttccttgcagaagcttcgtggatgtctttgtaagcctga 680
Query: 481 tagcattatctgacagataatcaatgtttggctgtaacccgaaggcctccagacctagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcattatctgacagataatcaatgtttggctgtaacccgaaggcctccagacctagag 740
Query: 541 gacattactcagcatggtatcatagagacggaggtaaattcagcataaattgtcttctat 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 741 gacattactcagcatggtatcatagagatggaggtaaattcagcataaattgtcttctat 800
Query: 601 acagaaattatcatgcgatttcttttttcttacccaggactctcc 645
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 801 acagaaattatcatgtgatttcttttttcttacccaggactctcc 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_l19.g1 MSMg01no120_l19.g1 CHROMAT_FILE:
MSMg01no120_l19.g1 PHD_FILE: MSMg01no120_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:17 2005
(574 letters)
>mm_chr18_54821442_54822415
Length = 974
Score = 1048 bits (542), Expect = 0.0
Identities = 563/570 (98%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 2 gaattccacagagaaaataacgtcttttgttgatgaaaagtctattaggaactccattcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gaattccacagagaaaataacgtcttttgttgatgaaaagtctattaggaactccattcc 711
Query: 62 atcatcaagttctggctagctgatgtcggcgtgaggtgcccagtagggattagaaataat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atcatcaagttctggctagctgatgtcggcgtgaggtgcccagtagggattagaaataat 651
Query: 122 gctctttaattctctggggagattttgcttaagtactcacaccagcattgagtttggatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gctctttaattctctggggagattttgcttaagtactcacaccagcattgagtttggatt 591
Query: 182 gccgtgaatagagttgaaacacacacattatccccatggaggataaagaaagctaaaaat 241
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 gccgtgaatagagttgaaacacacacattatccccgtggaggataaagaaagctaaaaat 531
Query: 242 tcacaggaggttatgttggaaaggcttggatccagacccagacttctgctctgtggttta 301
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tcacaggaggggatgttggaaaggcttggatccagacccagacttctgctctgtggttta 471
Query: 302 aacacatgaaaagcctgttctccttgctgttcccaagcacacaagcgtgaggatagactt 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aacacatgaaaagccttttctccttgctgttcccaagcacacaagcgtgaggatagactt 411
Query: 362 cgagccagttctgtagacagaatcacagtcttgtgtaatttcttacttatggtttcttaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cgagccagttctgtagacagaatcacagtcttgtgtaatttcttacttatggtttcttaa 351
Query: 422 aaatacagc-tactcctatttacagttagattccctttaaatgttattgtaggtcttttg 480
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaataca-cttactcttatttacagttagattccctttaaatgttattgtaggtcttttg 292
Query: 481 gcagttctttcagtagagagcaaaggcctggttgtgacttctacaatgctcaacacattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gcagttctttcagtagagagcaaaggcctggttgtgacttctacaatgctcaacacattt 232
Query: 541 atagagttaagtgtgttttgcatagctttg 570
||||||||||||||||||||||||||||||
Sbjct: 231 atagagttaagtgtgttttgcatagctttg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
