Query= MSMg01no121_k06.b1 MSMg01no121_k06.b1 CHROMAT_FILE:
MSMg01no121_k06.b1 PHD_FILE: MSMg01no121_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:29 2005
(295 letters)
>mm_chr18_54218475_54219169
Length = 695
Score = 555 bits (287), Expect = e-162
Identities = 293/295 (99%)
Strand = Plus / Plus
Query: 1 agatttctacttcagtataaatgagcgtccaaactcccccagccaattaaatgttactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatttctacttcagtataaatgagcgtccaaactcccccagccaattaaatgttactga 260
Query: 61 acaatgcagttgcttatgttttatttacagccttcaaaagaagaacattattctttatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatgcagttgcttatgttttatttacagccttcaaaagaagaacattattctttatta 320
Query: 121 gttctaattagaccctcctgggatagggcctatcttatatctgctgttacttgtcagttt 180
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 321 gttctaattagaccctcctgggataggacctatcttatgtctgctgttacttgtcagttt 380
Query: 181 ttgttgtatgtagcatagcggttatttaataaaacctggctgtttccttttcccattctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgtatgtagcatagcggttatttaataaaacctggctgtttccttttcccattctc 440
Query: 241 aaacatttatcgtaaaaacaaatattgcaagttgcagatttatcaaggtttgtta 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacatttatcgtaaaaacaaatattgcaagttgcagatttatcaaggtttgtta 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no121_k06.g1 MSMg01no121_k06.g1 CHROMAT_FILE:
MSMg01no121_k06.g1 PHD_FILE: MSMg01no121_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:29 2005
(600 letters)
>mm_chr18_54326375_54327376
Length = 1002
Score = 986 bits (510), Expect = 0.0
Identities = 579/602 (96%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 1 taggcaaatgaaaaaaggaaagaaaacctataggatatattgtgcaatccacaaaatttt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 802 taggcaaatgaaaaaaggaaagaaaacctataggatatattgtgcaattcacaaaatttt 743
Query: 61 aagattgactgcacattagaaaataacactttaagttcttgagattagtaattgtatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aagattgactgcacattagaaaataacactttaagttcttgagattagtaattgtatcct 683
Query: 121 gattgcttaagaaaatattcttgttcttagcaaaaaccttgcaacaaattgaggaaaaat 180
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 682 gattgcttaagaaaatattcttgttcttagcaaagaccttacaacaaattgatgaaaaat 623
Query: 181 ggatttgatatctataaattactcttaaatgatttaaggaataaaattatgggaatagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 622 ggatttgatatctataaattactcttaaatgatttaaggaataaaattataggaatagaa 563
Query: 241 ttatagtggga-tttttttaaagaggacataacctgttcaccatttgaatttcacttact 299
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 562 ttatagtgggattttttttaaagaggacataacatgttcaccatttgaattccacttact 503
Query: 300 gataacaactgcaaaactccattcattagcaaatattcgaataactatgaactttccatt 359
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 502 gataacaactgcaaaactccattcattagcgaatatttgaataactatgaattttccatt 443
Query: 360 gctgacaatagttatcagtcaatagagtatttttttttcagaaagctttagtcaaccatc 419
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 actgacaatagttatcagtcaatagagtttttttttttcagaaagctttagtcaaccatc 383
Query: 420 aactctttattttgggttatattatagatacaccccagttacagcaatcctttgaggact 479
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct: 382 aactctttattttgggttatattataggtacatcccagttatagcaatcctttgaggact 323
Query: 480 tgtccttagtgcctcagaggagagaatgagctctacagcatggctctattgagctccagg 539
| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||
Sbjct: 322 tctccttagtgcctcagagaatagaatgagctctacagcatggctctattgaggtccagg 263
Query: 540 atgcagcctttcaaccatatgtggtgatttgaatatgcttagtccattgggggt-ggggg 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 262 atgcagcctttcaaccatatgtggtgatttgaatatgcttagttcattggggggcggggg 203
Query: 599 ga 600
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1002
Length adjustment: 10
Effective length of query: 590
Effective length of database: 992
Effective search space: 585280
Effective search space used: 585280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
