Query= MSMg01no121_m20.b1 MSMg01no121_m20.b1 CHROMAT_FILE:
MSMg01no121_m20.b1 PHD_FILE: MSMg01no121_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:42 2005
(309 letters)
>mm_chr18_57419307_57420015
Length = 709
Score = 551 bits (285), Expect = e-161
Identities = 303/309 (98%)
Strand = Plus / Minus
Query: 1 aaaataataactaataatcacatgaagagctatttctttgttgccaacaggtcacaataa 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 509 aaaataataactaataatcatgtgaagagctatttctttgttgccaacaggtcagaataa 450
Query: 61 aaccggtatatatggaatagctataatgggtcatacttcctgatgtgtcctaatattgaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaccagtatatatggaatagctataatgggtcatacttcctgatgtgtcctaatattgaa 390
Query: 121 catcaatgatgccttgacagtttcatcagtgttctcagccatcagtagaatgttagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catcaatgatgccttgacagtttcatcagtgttctcagccatcagtagaatgttagagtt 330
Query: 181 acttatctcaaacagatcccttcccatgaatgctgaaaatggtttgatcacatttactct 240
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 329 acttatctcaaacagctcccttcccatgaatgctgagaatggtttgatcacatttactct 270
Query: 241 agttcacaatagctcacgtaaaacgtgctgttgctattctccatcttgtatccctctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agttcacaatagctcacgtaaaacgtgctgttgctattctccatcttgtatccctctcct 210
Query: 301 gcctccaga 309
|||||||||
Sbjct: 209 gcctccaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_m20.g1 MSMg01no121_m20.g1 CHROMAT_FILE:
MSMg01no121_m20.g1 PHD_FILE: MSMg01no121_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:42 2005
(232 letters)
>mm_chr18_57294280_57294911
Length = 632
Score = 424 bits (219), Expect = e-123
Identities = 228/231 (98%), Gaps = 1/231 (0%)
Strand = Plus / Plus
Query: 1 ctttggtaaactcccagggtctggtgttctgggttcagcactccactctgatactttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttggtaaactcccagggtctggtgttctgggttcagcactccactctgatactttgta 260
Query: 61 gttgtgtggtttggtgtggcttcacacctggatgtatgtctataaaatcaggatgaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgtgtggtttggtgtggcttcacacctggatgtatgtctataaaatcaggatgaaata 320
Query: 121 atcatgcttattctggagccaaaggagttaatgtttgggaagccctaacaagccccaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcatgcttattctggagccaaaggagttaatgtttgggaagccctaacaagccccaaac 380
Query: 181 agaggagtggttagttgttgttgttgttgttgtttttgttngttgttgttg 231
||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 381 agaggagtggttacttgttgttgttgttgttgttgttgtt-gttgttgttg 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
