Query= MSMg01no122_g22.b1 MSMg01no122_g22.b1 CHROMAT_FILE:
MSMg01no122_g22.b1 PHD_FILE: MSMg01no122_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:52 2005
(681 letters)
>mm_chr18_61305666_61306748
Length = 1083
Score = 1224 bits (633), Expect = 0.0
Identities = 667/679 (98%), Gaps = 2/679 (0%)
Strand = Plus / Minus
Query: 1 gatctcaatgaaatggagacattcacctaccctctcttggaaacaaaggtcagcacattt 60
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 695 gatctcaatgaagtggagacattcacctagaatctcttggaaacaaaggtcagcacattc 636
Query: 61 ttttgctggttgcagagttttgcttctgaccgtagcccgtggcctgcataaagaggctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttttgctggttgcagagttttgcttctgaccgtagcccgtggcctgcataaagaggctga 576
Query: 121 tttcccttctggttttcttctgggtactagctctctggccgggccccaagaatgctggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tttcccttctggttttcttctgggtactagctctctggccgggccccaagaatgctggct 516
Query: 181 cctgacagctaaccggctacaggtggtgactgcccaggtgaagatgtgtctgaaccctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cctgacagctaaccggctacaggtggtgactgcccaggtgaagatgtgtctgaaccctca 456
Query: 241 ttgtttggccttgcacagcttcacggacatctacacaggtaggtgccaaccttctatgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgtttggccttgcacagcttcacggacatctacacaggtaggtgccaaccttctatgtc 396
Query: 301 ctcaag--tcccagatcaggtttgggagccaccttactggtctgtgcttggttcctccat 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctcaagcaccccagatcaggtttgggagccaccttactggtctgtgcttggttcctccat 336
Query: 359 ccactgcacccatcttagcagcttctgaagaatcggtctttgccctgactgcctcagctc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 335 ccactgcacccatcttagcagcttctgaagaatcggtctttgccctgactgcctctgctc 276
Query: 419 cagcaacagtcgggggtgggaagtggagcagtaataacccttcacaaccaagatagttta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagcaacagtcgggggtgggaagtggagcagtaataacccttcacaaccaagatagttta 216
Query: 479 aaaataacaccactcgccaatcagtactgacataacctttaatcccagcactggggagac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 aaaataacaccactcgccaatcagtactgacataacctttaatcccagcactggggagac 156
Query: 539 aggggtaggccgatctctgagtttggggccagcctggtttataagttgaattgtaggaca 598
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 155 aggggtaggcggatctctgagtttggggccagcctggtttataagtagaattgtaggaca 96
Query: 599 gccagggctacacagtgaaaccctgtcttgagaaaccaataaaatgaaatgaaatgaaat 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 95 gccagggctacacagtgaaaccctgtcttgagaaaccaataaaataaaatgaaatgaaat 36
Query: 659 gaaatgaaatgaaatgaaa 677
|||||||||||||||||||
Sbjct: 35 gaaatgaaatgaaatgaaa 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1083
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1073
Effective search space: 719983
Effective search space used: 719983
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_g22.g1 MSMg01no122_g22.g1 CHROMAT_FILE:
MSMg01no122_g22.g1 PHD_FILE: MSMg01no122_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:52 2005
(539 letters)
>mm_chr18_61149972_61150910
Length = 939
Score = 1035 bits (535), Expect = 0.0
Identities = 538/539 (99%)
Strand = Plus / Plus
Query: 1 tgggtggaggctagacttgaacctggaggaaagaggaggcatgtgacttggagacttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggtggaggctagacttgaacctggaggaaagaggaggcatgtgacttggagacttggg 260
Query: 61 aggctgtgtggagacacttaacaggtgggagggaagtctagaaacaaggccgcagctgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgtgtggagacacttaacaggtgggagggaagtctagaaacaaggccgcagctgac 320
Query: 121 aacctagaaggtttccagtgtgggatgcaggcttaggaggaggttgtggagaccagaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacctagaaggtttccagtgtgggatgcaggcttaggaggaggttgtggagaccagaaat 380
Query: 181 atgagagggctaactaacagagcgctgaatctactgcatgcttgtgccattctagggaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagagggctaactaacagagcgctgaatctactgcatgcttgtgccattctagggaga 440
Query: 241 tgggtgagttctcagcagtggaaatgaatgtctcaggtctaggctgtaaatccttcagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtgagttctcagcagtggaaatgaatgtctcaggtctaggctgtaaatccttcagaa 500
Query: 301 aacacccgctaatagcttctaggaatgctcactcagggagaggtggaacaggtgtcagcc 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacacccgctaatagcttctcggaatgctcactcagggagaggtggaacaggtgtcagcc 560
Query: 361 ccatgcaaatggtcccaccccttactcttactcttcccacacccagactaccaaaatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccatgcaaatggtcccaccccttactcttactcttcccacacccagactaccaaaatccc 620
Query: 421 agaggtctcagggaagtctagcccaggcaccttacttcccaggcccaggtggagggaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggtctcagggaagtctagcccaggcaccttacttcccaggcccaggtggagggaact 680
Query: 481 agagggagccagttctaccactcagaagaaaagggacaaagaccattgtcttctcctag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agagggagccagttctaccactcagaagaaaagggacaaagaccattgtcttctcctag 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
