Query= MSMg01no122_m02.b1 MSMg01no122_m02.b1 CHROMAT_FILE:
MSMg01no122_m02.b1 PHD_FILE: MSMg01no122_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:34 2005
(744 letters)
>mm_chr18_52240527_52241674
Length = 1148
Score = 1135 bits (587), Expect = 0.0
Identities = 620/633 (97%), Gaps = 4/633 (0%)
Strand = Plus / Minus
Query: 1 taaattctcttttatatttgtggtatagccttcaaattacacttgaacacctatgttttc 60
|||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||
Sbjct: 633 taaattctcttttatattagtggtatagcaaacaaattagacttgaacacatatgttttc 574
Query: 61 cctgaagaataagtgcagttaacagggacatgagttgatattctccacaagatcatatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cctgaagaataagtgcagttaacagggacatgagttgatattctccacaagatcatatga 514
Query: 121 gtggggatatgctgggttcagctcctttttgaac----tataggaagcaatataaactca 176
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 513 gtggggatatgctgggttcagctcctttttgaactacatataggaagcaatataaactca 454
Query: 177 taacatttatgtcaaaagacatttctggatatggtttagtcatttgagacaacacgttta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taacatttatgtcaaaagacatttctggatatggtttagtcatttgagacaacacgttta 394
Query: 237 agaaaatatagctaggctggagttctgcttgtggtataatcattttctttcttgaatttt 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 393 agaaaatatagctaggctggagttctgcttgtggtataatcattttctttattgaatttt 334
Query: 297 ccttatattttctaatgatcagcaccatgtgcctcttttacacacaagctttatgaaagc 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccttatattttctaatgagcagcaccatgtgcctcttttacacacaagctttatgaaagc 274
Query: 357 atttatctagttaatcttagttcatgaagaggcagaccaagcactctatttgcacattta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atttatctagttaatcttagttcatgaagaggcagaccaagcactctatttgcacattta 214
Query: 417 tgacttctctatgttttataatttttgattatatatataataatttgacttgatgctttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgacttctctatgttttataatttttgattatatatataataatttgacttgatgctttt 154
Query: 477 cccataccatatatctaatgtgctgactcgatgccactatatcaggcacatgctcctgaa 536
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cccatactatatatctaatgtgctgactcgatgccactatatcaggcacatgctcctgaa 94
Query: 537 gctgtccctaccttggacaggggctgccagggacaggaatcttatggtctccttctgcat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gctgtccctaccttggacaggggctgccagggacaggaatcttatggtctccttctgcat 34
Query: 597 ccagagatgatcctgtgccacaaagctacatac 629
|||||||||||||||||||||||||||||||||
Sbjct: 33 ccagagatgatcctgtgccacaaagctacatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1148
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1138
Effective search space: 835292
Effective search space used: 835292
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_m02.g1 MSMg01no122_m02.g1 CHROMAT_FILE:
MSMg01no122_m02.g1 PHD_FILE: MSMg01no122_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:34 2005
(654 letters)
>mm_chr18_52114351_52115402
Length = 1052
Score = 1083 bits (560), Expect = 0.0
Identities = 641/696 (92%), Gaps = 47/696 (6%)
Strand = Plus / Plus
Query: 1 ctagacaagagaaaattaagactggtttcagtttttctgcaatctatcggtaatgtagtc 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 161 ctagacaagagaaaattaagactggtttcagtttgtctgcaatctatcggtaatgtagtc 220
Query: 61 agagaaggaaaaaaaaaaccaaaaaaaaaaaa--------------cctctgccagcaca 106
||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 221 agagaagaaaaaaaaaaa--aaaaaaaaaaaaaaaaaaaaaaaaaacctctgccagcaca 278
Query: 107 caggcaggaaacagtaaaacttgtgccaacattatgtaatcatctgcctgccttaactac 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 caggcaggaaacagtaaaacttgtgccaacattatgtaatcatctgcctgccttaactat 338
Query: 167 gaaaacccataattttaaaatccacagttatgctgaaaataactgaatgtgtgtgtgtgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaaacccataattttaaaatccacagttatgctgaaaataactgaatgtgtgtgtgtgt 398
Query: 227 gtg----------------------------aattttaactcagcctaaatgttctttct 258
||| |||||||||||||||||||||||||||||
Sbjct: 399 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaattttaactcagcctaaatgttctttct 458
Query: 259 attagtttagctaatgaaactataatctattaaaaaatatgtcatatggctacattgctg 318
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 459 attagtttagctaatgaaactataatctattaaaaaat--gtcatatggctacattgctg 516
Query: 319 ttatatatgagacaaagttaaaaatacaatgatttttaactgtcgttttctagaataata 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttatatatgagacaaagttaaaaatacaatgatttttaactgtcgttttctagaataata 576
Query: 379 taattattttttacaaatagtataattattttgagttagatttttaagttagcaagcaaa 438
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 577 taattattttt-acaaatagtataattattttgagttagatttttaaattagcaagcaaa 635
Query: 439 gtaatgcattacatgatgacgttttcagtaatatataccattgttctttcttcttatcca 498
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 gtaatgcattacatgatgacattttcagtaatatataccattgttttttcttcttatcca 695
Query: 499 tcttccttccatagcatcctccctaactctcctgtctcccacacctccacttttccctca 558
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 696 tcttccttccatagcatcctccctaactctcctgtctcccccacctccacttttccctca 755
Query: 559 tattgttcacatggactccaatgcacttagtttctcctattctttccctttaggttcatc 618
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 756 tattgttcacatggactccaatgcacttagtttctcctattctttccctttatgttcatc 815
Query: 619 atctttttcttcagacatttctactcttatcacaca 654
||||||||||||||||||||||||||||||||||||
Sbjct: 816 atctttttcttcagacatttctactcttatcacaca 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1052
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1042
Effective search space: 671048
Effective search space used: 671048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
