BAC Information

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BAC

Clone NameMSMg01-124C02
Chromosome18 (Build37)
Map Location 56,726,965 - 56,727,373
singlet/doubletsinglet
Overlap geneAldh7a1
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458
Downstream geneRnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C02.T7 (MSMg01no124_c02.b1)MSMg01-124C02.TJ (MSMg01no124_c02.g1)
ACCAG333563AG333564
length1,9191,224
length of high quality
(start - end)
---729 (121 - 849)
definitionCHROMAT_FILE: MSMg01no124_c02.b1 PHD_FILE: MSMg01no124_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:48 2005CHROMAT_FILE: MSMg01no124_c02.g1 PHD_FILE: MSMg01no124_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGAGAATGTGNANGNATAGAGAGATATGGGAGGAGGGCAAATAATAAAT
GCAACTAGAAGGGGAAGAGAGAGAGCTCGGCAGTTAAATTACGATGTAGT
CACGGGAGTTTACATGAATATTAATGTTATTAAGCGTGTGATAGAAATCC
CTAGTATACTTACTCATAAATAGGGCGTTATGATTCTGCTATACATGTTT
AGAGACTGAGAGAAGGACTTTGATCGATTAGTATTTATTGGTACTTGGAG
AATAGATATTTCATAGAAGGAGAGACATTTCATTAGTATAGTGTCTAGAT
ATAATCACAGCATATTCTATGATACTAGAATTGTTTAAAGTGATATAGAG
TGCTGAAATGTTCTGGAATAATGATCTTAATCGAAACCGAATAGAATAAT
AAAACAATATAAAACTGCAGTAAGTGAGATAGTATAGTCTTGTGTTTATT
GCATGATCGGTGACAACACCTGCATAGATGGACACGACCGGTGATTGAAG
TAGAATACAAGAGTGTGAAGTTAGAGTCCTGGAGATAATTAGTATATTAA
TATCTTTTTTTTTTTATTTTTTTTTTTATTATTATTTTTTATTTCTATGT
TTTATATTTTATTCTGTTTTTCGTTTTTATTTTATCTATGAAAATAACAT
AATGGAAATATAAGTTATAAACCAATTATTCTTTCTATATGATATATCTT
ATTTTTTTTATTATTACGTTTACACTGTCTTAATTCTGGATGCATATTGT
ATTTTATCTCTTTATAACATATAATAAGATACACGGTATTGTTGTTCACC
ATCTATTGATGCAGTCATTGTTCGCAATATCAGTGTCATATTATCTATTC
GATATTAATTCTTATTCACAATATATAACGTATATATGATTCTTGTTGTA
CTGTATTAAGAATATCTACTATTTCGAGATAGTAACTATATTATATGCGC
ATTCATTTTACTTAATAGGCTGTAGCACAAACTCGCATCTAATCATGTCG
ACGGCTCTATATAGGAATATATGTTTTACTGATATAAGACATAGTAATGA
ATCCTAGGTATAAAGTACTGGGAATGAGATGGTAAATTTGGATAAAATAA
GTTTATCAACAATAGTGTATATTCAATTACGGTTATGATAGAGTCTGTGT
TCCTTTACGTCTTTCATTCATATGATATCCAATTAATCAAGCGTTAAATG
AATGACAAAATTCACTGTTATAGAATAACAACGTTCTACGATCTCATATT
AATTTGTTTCCATTGTCTTATTCTGAATATAGATTAATTCTTTTATCATA
ACATTTTCTGTGAGATACAGTATTCTCTTTTATTCCTTATGTCTATTAGA
CCTGGTATTAAATATGAGCTGTAGTGTATGTATGTTAATTGTTTTAGGAC
AGACTATATAATACTGTTCTTAGTTATGCTACAGGAGGACAGAAAAAATG
ATGTGTAATATCAATCTCTATGCTTGCACTGCTTATCTAGATACTACTAA
GCGAAATAAGGTGCTAATTATGGACTTGTATATGAATGCATATAATGAGT
TATGAATCAAAGACGTGATAGAAAATACTTGCAGAAACGACGATATAGTT
AACTACATTCGACGTTATGATAATATACAAGATTTAGACATAAGTTTAGT
TTTCCTTATCGTGTTACGATATTTTATTATATATTACTTGCTATCCGTAT
GAAACCTAAATCAGTCATATACGAGTTATAATAGTTATTATATTTACATA
TTATCTAACGACTGATATTGAGAGAGATAGAATATTGTACGTAGGCGTAA
TAGCTAATCTATTATAAACCGTAAGCATAGTGCTAAAGAAACTGTATCTG
TCAAGAATTGGTGTAGGATGCACGTAGCTCATTGTATATTTATATTGTAT
CCATGCGAGTCATATATTG
TTTTTTTTACAAGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTGAACCAGTCAGAGAGAAATAAAGCTAA
CAAGCTTGGCCCTTGGAGCATACTTCAGATTGAATGCGGGCCACAGGATG
GGCTGAGCTCAACAGCGTTGTGCTTTTCTGTCTCCACAGAGGATCATGGA
ATTACAACTTTGTTACATTACTCAGAGAAAAGTAATTTACAACAAGGTCT
AAAGATGAAGATTAAGAATGAAATAAAAACACATGCTCCTACTTGTCCTA
CATTAAAGAATTTCTTTGTGTAGAGGAAATTTTTCTTTTTCAAGATTTAT
TTATTTTATGTATATGAGTACACTGTAGCTGTACAGATGGTTGTAAGCCT
TCATGTAGTTGTTGGGAATTGAATTTAGGACCTCTGCTCACTCAGGTCTG
CCCCACTCGCTTAGGATAAAGATTTATTTATTATTATAAATAAGTACACT
GTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCTGATCTCATTACGGGT
GGTTGTGAGCGACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGA
AGAGCAGTCAGTGAGCTTAACCTGAGCCATCTCTCCAACCCTGCAATTTT
TCTTTTTGTAAAGGGATTTTTACCAGGTACATTGTTTAAATTTAAAGAGA
GAGGAGTGCTAACGTAGTAAAACTCAAACTTACAAACATTCTCGCCCTAA
ACTGCTTAGGTCATTTGTTTTCAAAGTCCTTCCTTAGCTTTGGGAAAATG
AGCTTTGTCTCTGTAGGCCATCTGTTCCTGGTTTTTGATTTTTTTGTTTT
TTTTCTCAGTAGTGTTGAAATTTTTTTGACGCTCAGTCAGCAGCAAACAT
AAACTGCATTTTAGGCTTAAATAACAAAGTTTTAAAGTTATCATTTGGGC
AAAATCTCCATTCTTGCATTGAATTTTTAACCTTTGCAACCCCTGTTCCC
CCTCTGACCCCGTAACCCTGGCCCTGGGTGGGGGCCCCCCCCTCCCCCCC
CCCTTTTGGTCCCCTCCGGCTGGTTTTGGTTGGGTTTTTATGCCAACGGG
CTTTTCTTTTGGTTTTCCCCTTATAACTCCCCCTTATTTTCTCTTTAAAA
TCAAAGGTGGGTCTCCCAACACATAAAAATAATGGCTGGGCTTCCGGCCT
CTCAGTAGAGGCTGGCGAATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c02.g1 MSMg01no124_c02.g1 CHROMAT_FILE:
MSMg01no124_c02.g1 PHD_FILE: MSMg01no124_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:48 2005
         (729 letters)



>mm_chr18_56726965_56728093
          Length = 1129

 Score =  768 bits (397), Expect = 0.0
 Identities = 406/409 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttcagattgaatgcgggccacaggatgggctgagctcaacagcgttgtgcttttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tacttcagattgaatgcgggccacaggatgggctgagctcaacagcgttgtgcttttctg 350

                                                                       
Query: 61  tctccacagaggatcatggaattacaactttgttacattactcagagaaaagtaatttac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tcttcacagaggatcatggaattacaactttgttacattactcagagaaaagtaatttac 290

                                                                       
Query: 121 aacaaggtctaaagatgaagattaagaatgaaataaaaacacatgctcctacttgtccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aacaaggtctaaagatgaagattaagaatgaaataaaaacacatgctcctacttgtccta 230

                                                                       
Query: 181 cattaaagaatttctttgtgtagaggaaatttttctttttcaagatttatttattttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cattaaagaatttctttgtgtagaggaaatttttctttttcaagatttatttattttatg 170

                                                                       
Query: 241 tatatgagtacactgtagctgtacagatggttgtaagccttcatgtagttgttgggaatt 300
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 169 tatatgagtacactgtagctgtacagatggttgtgagccttcatgtggttgttgggaatt 110

                                                                       
Query: 301 gaatttaggacctctgctcactcaggtctgccccactcgcttaggataaagatttattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 gaatttaggacctctgctcactcaggtctgccccactcgcttaggataaagatttattta 50

                                                            
Query: 361 ttattataaataagtacactgtagctgtcttcagacacaccagaagagg 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  ttattataaataagtacactgtagctgtcttcagacacaccagaagagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)