This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-127N03
Chromosome
18 (Build37)
Map Location
89,970,456 - 90,161,205
singlet/doublet
doublet
Overlap gene
LOC383320
Upstream gene
LOC623208
,
Socs6
,
Rttn
,
Cd226
,
Dok6
Downstream gene
LOC620693
,
Eif3s6-ps2
,
LOC665526
,
Txndc10
,
LOC666779
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC623177
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:623177
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC665497
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665497
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins
pseudo
: _no_value
name
LOC100040003
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040003
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
name
LOC623208
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:623208
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 Proteins
pseudo
: _no_value
name
Socs6
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:54607
MGI:1924885
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rttn
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:246102
MGI:2179288
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Cd226
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:225825
MGI:3039602
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Dok6
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:623279
MGI:3639495
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC383320
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:383320
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins
pseudo
: _no_value
name
LOC620693
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:620693
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
Eif3s6-ps2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16343
MGI:103204
definition
gene_synonym
: Int6-ps2
note
: eukaryotic translation initiation factor 3, subunit 6, pseudogene 2
pseudo
: _no_value
name
LOC665526
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665526
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
Txndc10
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67988
MGI:2442418
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666779
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666779
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins
pseudo
: _no_value
name
LOC100040003
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149270245
GeneID:100040003
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
product
: hypothetical protein LOC100040003
transcript_id
: XM_001473931.1
name
Socs6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802820
GeneID:54607
MGI:1924885
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: suppressor of cytokine signaling 6
transcript_id
: NM_018821.3
name
Rttn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:37704388
GeneID:246102
MGI:2179288
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: rotatin
transcript_id
: NM_175542.3
name
Cd226
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:85540455
GeneID:225825
MGI:3039602
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CD226 antigen
transcript_id
: NM_178687.2
name
Cd226
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:85540458
GeneID:225825
MGI:3039602
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: CD226 antigen
transcript_id
: NM_001039149.1
name
Dok6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:85677490
GeneID:623279
MGI:3639495
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: docking protein 6
transcript_id
: NM_001039173.1
name
Txndc10
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117606384
GeneID:67988
MGI:2442418
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: thioredoxin domain containing 10
transcript_id
: NM_198295.2
name
LOC100040003
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149270246
GeneID:100040003
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001473981.1
name
Socs6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31543755
CCDS:CCDS29389.1
GeneID:54607
MGI:1924885
definition
GO_function
: GO:0005515 - protein binding [Evidence IPI]
GO_process
: GO:0001678 - cell glucose homeostasis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0040008 - regulation of growth [Evidence IMP]
codon_start
: 1
note
: cytokine inducible SH2-containing protein CIS4; SH2 domain containing SOCS box protein SOCS6; cytokine inducible SH2-containing protein 4; suppressor of cytokine signaling 4
product
: suppressor of cytokine signaling 6
protein_id
: NP_061291.2
name
Rttn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:37704389
CCDS:CCDS29390.1
GeneID:246102
MGI:2179288
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]
GO_function
: GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0007368 - determination of left/right symmetry [Evidence IMP]
codon_start
: 1
product
: rotatin
protein_id
: NP_780751.2
name
Cd226
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85540456
CCDS:CCDS29392.1
GeneID:225825
MGI:3039602
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0001816 - cytokine production [Evidence IDA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1; platelet and T cell activation antigen 1
product
: platelet and T cell activation antigen 1 isoform a
protein_id
: NP_848802.2
name
Cd226
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85540459
CCDS:CCDS29391.1
GeneID:225825
MGI:3039602
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]; GO:0001816 - cytokine production [Evidence IDA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2; platelet and T cell activation antigen 1
product
: platelet and T cell activation antigen 1 isoform b
protein_id
: NP_001034238.1
name
Dok6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:85677491
GeneID:623279
MGI:3639495
definition
GO_function
: GO:0005158 - insulin receptor binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
codon_start
: 1
note
: downstream of tyrosine kinases 6
product
: docking protein 6
protein_id
: NP_001034262.1
name
Txndc10
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117606385
GeneID:67988
MGI:2442418
definition
GO_component
: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0009055 - electron carrier activity [Evidence IEA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0003756 - protein disulfide isomerase activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA]
codon_start
: 1
product
: thioredoxin domain containing 10
protein_id
: NP_938037.2
name
LOC623177
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:623177
definition
number
: 2
pseudo
: _no_value
name
LOC623177
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:623177
definition
number
: 1
pseudo
: _no_value
name
LOC665497
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665497
definition
number
: 3
pseudo
: _no_value
name
LOC665497
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665497
definition
number
: 2
pseudo
: _no_value
name
LOC665497
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665497
definition
number
: 1
pseudo
: _no_value
name
LOC623208
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:623208
definition
number
: 1
pseudo
: _no_value
name
LOC383320
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:383320
definition
number
: 1
pseudo
: _no_value
name
LOC620693
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:620693
definition
number
: 4
pseudo
: _no_value
name
LOC620693
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:620693
definition
number
: 3
pseudo
: _no_value
name
LOC620693
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:620693
definition
number
: 2
pseudo
: _no_value
name
LOC620693
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:620693
definition
number
: 1
pseudo
: _no_value
name
LOC665526
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665526
definition
number
: 2
pseudo
: _no_value
name
LOC665526
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665526
definition
number
: 1
pseudo
: _no_value
name
LOC666779
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149270253
GeneID:666779
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 7 Proteins
product
: similar to high mobility group protein B2
pseudo
: _no_value
transcript_id
: XR_033001.1
clone name
MSMg01-523P24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-326J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-212G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371D10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-348O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-277F23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-076D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079H21
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-304H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159N07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-099P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130D09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113P02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-355E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461E10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-541B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-087B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-493F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-419J11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067D20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067B20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-275L20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344P14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442E23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-301B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-134P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-462C02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-345P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367M04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-376O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-207P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066C12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330J21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-484I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-304A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-261P18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-536A10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531I21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-132F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096K24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-408A16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-428C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-410E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-326I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-454K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-456J07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-098L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-157G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507C05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-160C07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-062C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-391H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-442B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-472L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-407P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-153F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-153G23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339C16
singlet/doublet
singlet
plural/unique
unique
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