BAC Information

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BAC

Clone NameMSMg01-130E03
Chromosome18 (Build37)
Map Location 49,982,286 - 49,982,789
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2
Downstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130E03.T7 (MSMg01no130_e03.b1)MSMg01-130E03.TJ (MSMg01no130_e03.g1)
ACCAG338058AG338059
length709711
length of high quality
(start - end)
504 (72 - 575)236 (124 - 359)
definitionCHROMAT_FILE: MSMg01no130_e03.b1 PHD_FILE: MSMg01no130_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:58 2005CHROMAT_FILE: MSMg01no130_e03.g1 PHD_FILE: MSMg01no130_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCGGCGGAAT
TCACTAAGGACGTTCTAAAGACCTAAATCCAATGCTCTCCTCTTGAATTT
TAATTCTTTGTATCACCTGGGGTACCATCCTGCTTCTTTTAGCAATGGAC
AAGCAAAATGTTTCTTACAATCTCCTACAGGCCCCACATTAACCCAACAG
AATCAGGTAGTCACATCTCTTCACTAACTCACACCACAGGAGTGTCACTA
CATTTAGTGCTTGGTTCTCCCTGATCCGCTTTCTTTACCCTCTTCCCTGT
GAAACCTACTTCCCCTCCTGTGGTTGAACTCTTGACACGGTGACTATCAG
CCAGGTTTGCACTGGAAGCACCGACAGAATTCCTAAGCTTCAGTCCCATC
TCTTCAAACATCATCTGTAATTACTTCAAATTCACAAACTAACATTATAC
TTAGCCTCCCTCACCAAAATGGCTCATCCTGCTATTTTCTCCCTATTTTT
ATTACATTAGTAAAACAACATTTCCTTAGACATCCAACCCTCTAATCAGT
GGCTTATCTCAATTCCGACTCTTCCAAGAGGAACCTTCCAAACATGCTCC
CTCATTTTATCCAGAGCAAAACTTCTCTACAAAAAAAAAAATTACATATA
GTCCACATGTACACCATGGCAGGCATCAAATTGTTTTACCTCTACCAGAA
AATGCAAAC
ATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTTATTTATACTTTTGGGGGTTGTTTTT
GCTTTGATTCGTGACTGTGCTCTGGTTCTTCCCTCTTGAAGAAAGCATTT
GATTTCTTTTTGACTTTACAGGAGCCCAAAGTTGAGAGATTGAGTTTTTA
AGAGAAATTTTAGTTAAGAGACTTTGGACTATTAGAAAATGAATTTTAAT
GTTTGAATTTGTAAAATGTTTTATTTTGGGCTGTTGAGATGGCTCAGTGG
GTAAGAGCACTGACTGCTCTTTGGAAGGTCCTGAGTTCAAATCCCAGCAA
TCATATGGTGGTTTTTTACCACCCACCCCCGCCACCTGATGCCCTCTTCT
GGTGTGTTTGAAGTTAGCTACAGTATACATATGAATAATAATAAATAGGG
CGTTAAAAAAAGTTATATTTTGTAATGTCAACATTAATATGTGATCTTGG
CGTTGGAGAAGGAAAGGACAGGTGGTGGCATAACAGTGAGGTATTTGTGT
GTCAGGTTGACAAGGGGTCAGTGGTGTTGGCTACTTTCCTGAAACAAGCT
TCTGAGAAGAGGGAGCCTCAGCTAAGAAAATGCCCCCATAATATCAGGCT
GCAGCCAGAGTTATAGGCCACTTTTAAGGGAAGGCCCAGCCCATTGTGGA
TGGTGAGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_e03.b1 MSMg01no130_e03.b1 CHROMAT_FILE:
MSMg01no130_e03.b1 PHD_FILE: MSMg01no130_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:58 2005
         (504 letters)



>mm_chr18_49982086_49982990
          Length = 905

 Score =  882 bits (456), Expect = 0.0
 Identities = 492/504 (97%), Gaps = 1/504 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaaatccaatgctctcctcttgaattttaattctttgtatcacctggggtaccatcct 60
           |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cctaaatccaatgagctcctcttgaattttaattctttgtattacctggggtaccatcct 260

                                                                       
Query: 61  gcttcttttagcaatggacaagcaaaatgtttcttacaatctcctacaggcccc-acatt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gcttcttttagcaatggacaagcaaaatgtttcttacaatctcctacaggcccccacatt 320

                                                                       
Query: 120 aacccaacagaatcaggtagtcacatctcttcactaactcacaccacaggagtgtcacta 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 aacccaacagaatcaggtagtcacatctcctcactaactcacaccacaggagtgtcacta 380

                                                                       
Query: 180 catttagtgcttggttctccctgatccgctttctttaccctcttccctgtgaaacctact 239
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttagttcttggttctccctgatccgctttctttaccctcttccctgtgaaacctact 440

                                                                       
Query: 240 tcccctcctgtggttgaactcttgacacggtgactatcagccaggtttgcactggaagca 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 441 tcccctcctgtggctgaactcttgacacggtgactatcagccaggtttgcattggaagta 500

                                                                       
Query: 300 ccgacagaattcctaagcttcagtcccatctcttcaaacatcatctgtaattacttcaaa 359
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgatagaattcctaagcttcagtcccatctcttcaaacatcatctgtaattacttcaaa 560

                                                                       
Query: 360 ttcacaaactaacattatacttagcctccctcaccaaaatggctcatcctgctattttct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcacaaactaacattatacttagcctccctcaccaaaatggctcatcctgctattttct 620

                                                                       
Query: 420 ccctatttttattacattagtaaaacaacatttccttagacatccaaccctctaatcagt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctatttttattacattagtaaaacaacatttccttagacatccaaccctctaatcagt 680

                                   
Query: 480 ggcttatctcaattccgactcttc 503
           |||||||||||||||| |||||||
Sbjct: 681 ggcttatctcaattcctactcttc 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space:   442130
Effective search space used:   442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)