BAC Information

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BAC

Clone NameMSMg01-130G16
Chromosome18 (Build37)
Map Location 49,732,361 - 49,733,080
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545470
Downstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130G16.T7 (MSMg01no130_g16.b1)MSMg01-130G16.TJ (MSMg01no130_g16.g1)
ACCAG338175AG338176
length7131,228
length of high quality
(start - end)
277 (380 - 656)722 (129 - 850)
definitionCHROMAT_FILE: MSMg01no130_g16.b1 PHD_FILE: MSMg01no130_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:11 2005CHROMAT_FILE: MSMg01no130_g16.g1 PHD_FILE: MSMg01no130_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAA
ATGCTTTTTCTGCATCTAACCAGATGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCC
CTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAA
TGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCG
ATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTT
CTGTGTTTTTTGTATCCGCACCCCCCCCGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCTACTTCTATCTTGAGAAATAGTTTGTGCAGAACTGGAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTA
GGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTTGG
TACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTT
TTGTTGAGTATAAGCTTTTGTACAAGGATCTGATGGTGTTTTGGATTTCT
TCAGGATCTGTTG
NCCGCCCTTTTNNNACCGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAAGTCTTTTATTTACAA
ATGCTTGCTACTGATGCCCTTCTGAAGGAAGAAATAGTACAGAAAAGCCA
TTACACTGGCTTTCTAACTTAACACTCAGAAGAGAATGGGGTCAGCCTTG
GTTTAGACACTAGGTTCCAAGCACTTGTTTATATAGCTGTTTGGAGAGAT
ACGTAATCCTTTTCCTCTCACTGTGGCCACAAAACTTAACAGAAACGAGG
TAAAGGAGGAGGGACTTCTTTTGAATGGTGGTCTTAGAGAACTTCCATCC
ATCATGGCAAGGAAAGCAGGGTGCAATAGTTCAGTTGATGGCAGTGGAAA
CGTGTGTTGTTGCCAGGAGCCAGGGACTATGGATCTGGATCTAGATCTAA
GTCTCATCTTTCACTACCAGCATGGTTCAAATGAAGACTCTGCATCCAAA
CCCCCGCAGAATTCCACACCAGCTGGGAAAGGTAAGCAGCCCTCTGCCTG
TGGACAGGAGATCTCAGGTCAATAGCATCTCTTCCATCTCCACATCTTTC
TCCTCTTCCCAAGTAGTTACAATTTCCTGATGCTGCAAACTGAAGATGAG
AAATCTATGGGGCATGCTTTCTTGTGGCTGTAACGCAACGGTCACCTTTT
TGTTGCTGGGCTTGTTAATATTATTTTGCTTTGTGGAAGTGGTTTCCCAA
TCAACTTGCTCTTTAGAAGACAAGCTATTTTTCTTAAGGACTGTTTTCTA
TAATGTGCAAGCTAACATGCGTAACATTATCCTTTTTCTTCCACCTCTTT
GTGTCTTCATTTTAAATAGTGAATCCAATTTCCACACCATAAAAGCCCCA
AATTGGCTGGTTGTTTAAACAACTACGGCTTTCTTACCCCCAGTATTCCA
GCCCACTGCTCTCGATTGTCAGGGAAAGCTATTTGTAAAAAACTTTGATT
TTGAAAAACCAAATTTTTGTTCTTTGGCCCCCCAACATTTGGTTCTAAGT
TCCTCCGGTGGTCCCGGCCCTCCAAATTTTTAAGGGGTTTTCTTTTCTCT
ATAAAGGAGGGTAACGGGGGTCTCTTTACCCCCTATGGGGCCTCTTATAA
GAAACACCCACTTTCTCGGGTTCATTTTCCTCTGGGGGGTTTAACAACCC
CCAAAAGAGAGTGTCCTCGTGTCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_g16.g1 MSMg01no130_g16.g1 CHROMAT_FILE:
MSMg01no130_g16.g1 PHD_FILE: MSMg01no130_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:12 2005
         (722 letters)



>mm_chr18_49732161_49733282
          Length = 1122

 Score = 1286 bits (665), Expect = 0.0
 Identities = 707/721 (98%), Gaps = 1/721 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaatagtacagaaaagccattacactggctttctaacttaacactcagaagagaatg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaatagtagagaaaagccattacactggctttctaacttaacactcagaagagaatg 260

                                                                       
Query: 61  gggtcagccttggtttagacactaggttccaagcacttgtttatatagctgtttggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 261 gggtcagccttggtttagacactaggttccaagcacttgtttatatagctgcttggagaa 320

                                                                       
Query: 121 atacgtaatccttttcctctcactgtggccacaaaacttaacagaaacgaggtaaaggag 180
           ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atacgtaatccttttcctctcgctgtggccacaaaacttaacagaaacgaagtaaaggag 380

                                                                       
Query: 181 gagggacttcttttgaatggtggtcttagagaacttccatccatcatggcaaggaaagca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggacttcttttgaatggtggttttagagaacttccatccatcatggcaaggaaagca 440

                                                                       
Query: 241 gggtgcaatagttcagttgatggcagtggaaacgtgtgttgttgccaggagccagggact 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gggtgcaatagttcagttgatggcagtggaaacgtgtggtgttgccaggagccagggact 500

                                                                       
Query: 301 atggatctggatctagatctaagtctcatctttcactaccagcatggttcaaatgaagac 360
           |||||||||||||| ||||||||||||| |||||||||  ||||||| ||||||||||||
Sbjct: 501 atggatctggatctggatctaagtctcacctttcactaaaagcatggctcaaatgaagac 560

                                                                       
Query: 361 tctgcatccaaacccccgcagaattccacaccagctgggaaaggtaagcagccctctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgcatccaaacccccgcagaattccacaccagctgggaaaggtaagcagccctctgcc 620

                                                                       
Query: 421 tgtggacaggagatctcaggtcaatagcatctcttccatctccacatctttctcctcttc 480
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggacaggagatctcaggtcaatagcatctcttccatctccacatctttctcctcttc 680

                                                                       
Query: 481 ccaagtagttacaatttcctgatgctgcaaactgaagatgagaaatctatggggcatgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaagtagttacaatttcctgatgctgcaaactgaagatgagaaatctatggggcatgct 740

                                                                       
Query: 541 ttcttgtggctgtaacgcaacggtcacctttttgttgctgggcttgttaatattattttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttcttgtggctgtaacgcaacggtcacctttttgttgctgggcttgttaatattattttg 800

                                                                       
Query: 601 ctttgtggaagtggtttcccaatcaacttgctctttagaagacaagctatttttcttaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctttgtggaagtggtttcccaatcaacttgctctttagaagacaagctatttttcttaag 860

                                                                       
Query: 661 gactgttttctataatgtgcaagctaacatgcgtaacattatcctttttcttccacctct 720
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 861 gactgttttctataatgtgcaagctaacatgcgtaacattatcctttt-cttccacctct 919

            
Query: 721 t 721
           |
Sbjct: 920 t 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)