Query= MSMg01no132_m15.b1 MSMg01no132_m15.b1 CHROMAT_FILE:
MSMg01no132_m15.b1 PHD_FILE: MSMg01no132_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:24 2005
(595 letters)
>mm_chr18_31938404_31939399
Length = 996
Score = 1112 bits (575), Expect = 0.0
Identities = 590/595 (99%), Gaps = 1/595 (0%)
Strand = Plus / Plus
Query: 1 caaggtaagcagctgccctcttctccttgttaggtgttcttaaatgggggttgaatacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggtaagcagctgccctcttctccttgttaggtgttcttaaatgggggttgaatacag 260
Query: 61 gatctgtggtgggaaggagaagaaaacagtatttatacccctaagccaaaggagtttgtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gatctgtggtgggaaggagaagaaaacagtatttatacccctaagccaaaggtgtttgtg 320
Query: 121 tgagatagagctcagaggatagatatagtggctgcaaaagtggagactcccctgctagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagatagagctcagaggatagatatagtggctgcaaaagtggagactcccctgctagtc 380
Query: 181 tttgtttccacagccaatctgacagttccacctgccaaggagatttcgggggaggatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtttccacagccaatctgacagttccacctgccaaggagatttcgggggaggatgga 440
Query: 241 tttagatttaaaaggtgaggcctccagcatgtaaattcagggtcacttaaaggtgttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tttagatttaaaaggtgaggcctccagcatgtaaattcagggtcacttaaaggtggtctt 500
Query: 301 cctagtcaccacattcagatggcagagagtaaagcagagtcgtatttacaaggaaccaaa 360
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 501 cctagtcaccacattcagatggcagagaataaagcagagtcatatttacaaggaaccaaa 560
Query: 361 -ggagccgatcatttggggaatagtacttctagggcaagctgactatagttttatagaac 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagccgatcatttggggaatagtacttctagggcaagctgactatagttttatagaac 620
Query: 420 acatactaacttgggtctgtatcccaggcttagttatttattagctatgtaacctgggaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatactaacttgggtctgtatcccaggcttagttatttattagctatgtaacctgggaa 680
Query: 480 gttagtccatctccctgaactgtttcctgtctgtaggatgcaagttgtaattccttcagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttagtccatctccctgaactgtttcctgtctgtaggatgcaagttgtaattccttcagg 740
Query: 540 ttttaaggtaaggtatagtattttcagccaagggtgacactggaggtgttcagtg 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttaaggtaaggtatagtattttcagccaagggtgacactggaggtgttcagtg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 996
Length adjustment: 10
Effective length of query: 585
Effective length of database: 986
Effective search space: 576810
Effective search space used: 576810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_m15.g1 MSMg01no132_m15.g1 CHROMAT_FILE:
MSMg01no132_m15.g1 PHD_FILE: MSMg01no132_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:24 2005
(666 letters)
>mm_chr18_32109954_32111019
Length = 1066
Score = 1214 bits (628), Expect = 0.0
Identities = 655/664 (98%)
Strand = Plus / Minus
Query: 1 tcctgtcgaaatgcatcaggcaaacagaacagaacaaatacacacagcctggtatctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tcctgtcgaaatgcatcaggcaaacagaacagaacaaatacacacagcctggtatctgtg 605
Query: 61 gtgacatgtgctgggatttagagccaggctttgccacttggctagagtttgcctcaaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtgacatgtgctgggatttagagccaggctttgccacttggctagagtttgcctcaaggg 545
Query: 121 aggaagggagagtgacttcacttctcttatctttggcttcttcaactgtcaaatgcagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aggaagggagagtgacttcacttctcttatctttggcttcttcaactgtcaaatgcagtg 485
Query: 181 aaattcccagctgcacaatgctatgggaaaaggcaaactgaccataccattgggcagtcc 240
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct: 484 aaattcccagctgcacaatgctatggaaaaaggcaaactgacaataccattggtcagtcc 425
Query: 241 gtcctctccagatgttaaccacacataattgcaaatgtgttatattatgtttcgggggca 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 424 gtcctctccagatgttaaccacacataattgcaaatgtgttatattatgtttcgggggta 365
Query: 301 gggtctcattaattctacctggcttctttatactcactatgtaccccaagatgaccttga 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 364 gggtctcattaattctacctggcttctttatactcactatgtagcccaagatgaccttga 305
Query: 361 acctctcatcttcctgcctctgcttcccaagtgcagagaatctgggtatgagtaccacac 420
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 304 acctctcatcttcctgcctctgcttcccaagtgcagcgaatctaggtatgagtaccacac 245
Query: 421 agcttatgtagcattgaggatggaacccagggctttgcaattgggctacacaaacactat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agcttatgtagcattgaggatggaacccagggctttgcaattgggctacacaaacactat 185
Query: 481 aacaactgagctacaaccccaactgtaacttcaaaatttttcaattgaaaattttaagtc 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 184 aacaactgagctacaaccccaactgtgacttcaaaatttttcaattgaaaattttaagtc 125
Query: 541 tttggaaactaataatgctggtttggctgcattgtatggctgctctattaatgatatcag 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 124 tttggaaactaataatgctggtttggctgcactgtatggctgctctattaatgatatcag 65
Query: 601 ctgtgatgaacttcgatgagtcacggacaacacccaacacatcccagcttggagcctccc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ctgtgatgaacttcgatgagtcacggacaacacccaacacatcccagcttggagcctccc 5
Query: 661 cagc 664
||||
Sbjct: 4 cagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
