BAC Information

Click to search

BAC

Clone NameMSMg01-133P05
Chromosome18 (Build37)
Map Location 79,269,391 - 79,269,842
singlet/doubletsinglet
Overlap geneSetbp1
Upstream geneSlc14a1, Slc14a2, EG620155
Downstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133P05.T7 (MSMg01no133_p05.b1)MSMg01-133P05.TJ (MSMg01no133_p05.g1)
ACCAG340788AG340789
length705703
length of high quality
(start - end)
452 (73 - 524)166 (140 - 305)
definitionCHROMAT_FILE: MSMg01no133_p05.b1 PHD_FILE: MSMg01no133_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:54 2005CHROMAT_FILE: MSMg01no133_p05.g1 PHD_FILE: MSMg01no133_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXAAATCGGAGGAGAGCGCGGAAT
TCCCCAAATTACATCAACACAAGACAAATCGCCAGAGGCTCAAGCCACCA
GGAGCTGACCTGATCATACAATATAAGGTTGTCACCCTCAGAGGAGCGTC
TGTAGGACCCCTTCCCTGTTGCCACCTGCTACCAAGGAAACTTTGGTTTT
CCCGGTAGAATAAGCACAGTTAGGGAAATCCAGAGGAATTACAGTCGGTT
GTCAAAATATTCTGCAGGTAGGACATGGAATGGAAAATCGGTAGCAGACA
TCCCATCTACCTAGTATTGTAGAAAATGTGCTCACATGTGTCCGACCATT
GCCTCTTTCTGGTATGTTCTTTGAACATTTCAGTGAAGTAACTGTTAATC
CTCTCTGTTTTATAGACTTGGGAAAGGGCTCATAGGGCTTTTAAAATGGC
TTGCCTGATGTTACAGCTAATTACGGGAGCAAGGGGAGGTACTAGCTGAA
AGCCTTGTGCTCCCTGGATTCCAGCACCTTGACACCATCATTGAAAGATG
GTTCGCTGCTGTCTGGCTGGGCCATCTTTAACGCGAGAAGTGTCGAATAG
CTTGTATCTGGCTAGTTTGTACAGCTTTTTAGGTCTAGGCTGTGGCTGAA
GGCGAGCTTTGAAGATTCGCCCAAGGTCTATTGTTCCCGTCTGGTATTGG
CACAG
CATGATGCGGGAGGCCTGGCGGCGCCTGGTTCACAAAAGGAGGTGACCTA
TAGAATTTTCGAAAAATGCCTACCTACCTATAGTACATTTGGAATAAGTA
AGTGTCCTGGTTGTCCCCTGTGTAAAATTGANATAAGTTGGAGTTATCAC
AGAGAAAGGAGACTCCCTTGAGAAAAGGCTTCAATGAGATCCAGCTGTAA
GGCATTTTCACTGTTAGTGATCAAGAGTGGGAGGGCCCATTGTGGGTGGT
GCCATCTCTGGACTGGTAATCCTGGGTTCTCTAAGAAAGCAAGCTGAGCA
AGCCAGGGGAAACAATTCTTTAAGTAGTACCCTCCATGGCCTCTGCATCA
GCCATTGTTTTTCCCCCCCCGCCGTGTGTGTGAGTTCCAGTCCTGACTTC
CTTTGATGATGAGCAGTAATGAGAAAAGTGTAAGCTGAATATACCCTTTC
CCCCCTAACTTGCTTCTTGGCTATGACGCCCTGTGCAGGAATAGAAACCC
TGACTAACACAGCAAGTTAACTATCCGCATATAGATATCCAAGCTCCGGT
TGCGTGAACACTCACTAACACATTTTGCCTTAGGTCAATGCCAGCTGAAT
GCTTTGGAAAAACAAACCCACATGCTAATGTTTATATCCCGTTGATATCG
ATTTTATGCGCATCTTGGCTTCCTTTCTGAGTCCAGTCATAAAACAGTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_p05.b1 MSMg01no133_p05.b1 CHROMAT_FILE:
MSMg01no133_p05.b1 PHD_FILE: MSMg01no133_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:54 2005
         (452 letters)



>mm_chr18_79269342_79270193
          Length = 852

 Score =  789 bits (408), Expect = 0.0
 Identities = 441/452 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaaatcgccagaggctcaagccaccaggagctgacctgatcatacaatataaggttgt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 gacaaatcgccagaggctcaagccaccaggagctgacctgatcatagaatataaggttgt 442

                                                                       
Query: 61  caccctcagaggagcgtctgtaggaccccttccctgttgccacctgctaccaaggaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccctcagaggagcgtctgtaggaccccttccctgttgccacctgctaccaaggaaact 382

                                                                       
Query: 121 ttggttttcccggtagaataagcacagttagggaaatccagaggaattacagtcggttgt 180
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ttggttttcccggtagaataagtacagttagagaaatccagaggaattacagtcggttgt 322

                                                                       
Query: 181 caaaatattctgcaggtaggacatggaatggaaaatcggtagcagacatcccatctacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaatattctgcaggtaggacatggaatggaaaatcggtagcagacatcccatctacct 262

                                                                       
Query: 241 agtattgtagaaaatgtgctcacatgtgtccgaccattgcctctttctggtatgttcttt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtattggagaaaatgtgctcacatgtgtccgaccattgcctctttctggtatgttcttt 202

                                                                       
Query: 301 gaacatttcagtgaagtaactgttaatcctctctgttttatagacttgggaaagggctca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacatttcagtgaagtaactgttaatcctctctgttttatagacttgggaaagggctca 142

                                                                       
Query: 361 tagggcttttaaaatggcttgcctgatgttacagctaattacgggagcaaggggaggtac 420
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 141 gagggcttttaaaatggcttgcctgatgttacagctaattacgggagcaaggggaagtac 82

                                           
Query: 421 tagctgaaagccttgtgctccctggattccag 452
            || ||||||| ||| | ||||||||||||||
Sbjct: 81  aaggtgaaagctttgggttccctggattccag 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)