BAC Information

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BAC

Clone NameMSMg01-134E05
Chromosome18 (Build37)
Map Location 21,826,104 - 21,826,933
singlet/doubletsinglet
Overlap genenone
Upstream geneTtr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E05.T7 (MSMg01no134_e05.b1)MSMg01-134E05.TJ (MSMg01no134_e05.g1)
ACCAG341020AG341021
length1,1481,218
length of high quality
(start - end)		644 (125 - 768)830 (91 - 920)
definitionCHROMAT_FILE: MSMg01no134_e05.b1 PHD_FILE: MSMg01no134_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:29 2005CHROMAT_FILE: MSMg01no134_e05.g1 PHD_FILE: MSMg01no134_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTCTTTTTNAACATTGGGCGCTAAGACTCCTATGGGAGAGGATCC
GCGGAATTCTCTACAGTGATGGAGACATTTATAAGGCATATACTCTGGAG
TACTGTACCTCGATCACCTTAAAACTTTGTTTTTAGTTCTTTTGAAGACC
CTCCATCTGATTTCCATACTGTCTGCACTTGGGTACAAAGTGTTGCTTCT
CCCCACCCCCAGCCCATCCACATCTTCACTATGTTTTGTTTGCTTGATAA
TAGCCATTCAGACATGAGTGAGATGGGGTTATGCAGTTTTAGTTTTTATT
TCCTTGATGGCTAAGGATGTTGAACATGTATTCTTCAATTATTTATCTTG
TGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGCGCGCGCGCG
CGCGTTTGCGCGTGGGCGCGCACATGCATTTGTGTTTGTGGAAACCAGAG
GAATCAGACTCCCCTGGAGTTACAGGAAGTTGTGAATCACGCAGCATGAG
TCCTGAGGACCCTACCTGGGCCTTCTGAAAGAGCAGCAAGGGCTTTGCCC
AGTGAGCCATCACTCCATCTCAGTAATTCCACTTCTGAGAACTCCGTTGA
AGTCACTAGTATATTTATTGATTCTGGTCTTCAGTGTTTAATTTTCACAG
TTCTTTATAGGTCCTATTTATTAATGTTCAGGCAGATCAATTGTGGCAAA
GATTTTTCTCTCACTCTGAAGGCCTTTTCATTTCTCCGCTGGTTGTTTCG
TTGGCTGTGCAAAAGTTTTTAATGTCATGCAGTCTCATTTGACAGGCCTT
GGGAGTCGTCCCTTTTCCATTAGAATTCTCCTCAAAAAGTCCCCTGACAG
AGATAGTCTACAGTCTGTTCCCTGGGGCCTCTCTTAAATGCTTCTTGAAT
CTGGGTCTACAAAAAATGTTTGGGACTCATTTTGTTAAATTTATTCACGG
TGGAGAGATAATTTTTTTATTTTTCCTCATGCCTTTTATTTATTTGACTG
GTTTTCTTCTAAACTTTTAAATATCGTTCTTTTTTTAATAAACATTTTTT
TGCCTTTTCGCAAGTTATTCCCTTTCCTGGTTTTATCATTTCCTTACACT
CTCATCTTTTTATTTTTCCTCTTTTTTCTTTGTTACTCCATTTACACT

NCCCCACCCTTTTNTAACCAAGTGAGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAATGAAATTTTGCA
ACCCAACATCTAGTATGACATCCCTTATATTAGAATAGAGATGCTCAAAG
TGTTTTCTAACACTGGACAATTGTAATGCCATCATCCCAAAACCTGTAGA
AATGCAGATTCTTAGACTCTCTTCCACATCTACTAAAATAGAGACTCTGG
AGGAGCTGAGGAAGTGCAACAGTTTATGGCTCTAAAGCCTTCTAGGTAAT
TATGATGGCGGCTTACATCTGAGAACCAATGTTCTAGAAGAATCTAGCCA
TATCTTCACATCAGCACACTGAGAATGCTTAAAAGTTAATATTCCTTAAT
GTACTCACCCAATTGAAATACTAGAGAGATTTCCAGATGTTAACAATTGA
ACAGTTAGTTATATTATTTTTATCTCATGCATCTTTAGTCTGTAGATAAC
TGGGTCAGGTAATATGACTCAGTCTTAGCATTAATAATCATACCTGATTT
CACTCTTTGAGTTGCTGACATAAAAAACCTGCAATAGAGTCAAGTATCGC
ATCTAAGTGAATGCAAGCTGATGGGAACAGGGCAGTTCACACAAACACTT
GCTACATCATGCTTAATTATTTTCTCTCTATTGATGCTTATCTCACATCA
AATACTAGAGTTGGCAAAAGAAATACTTAATAAATGAACACTTAACTGAA
TGATATTTTAAATGTGATTTGTTAATGAACTAAGGATAAAAATCAATGGG
AGTTTTAAGCCAAATTCATTCCCACAGACACAGGACTTTATTTTTTATTT
TTTAAAATTTCAACTTTCTTACTACAAATTTGACATCAAGACATTTGAAA
AAGGTTAGTGCTGACCTAGAGATGCACTTTCAGAATGGCTTGCCTTTCTT
TTCCTAAATTACATAAACTTCCAGTGCTAGTGGGGCCCCAGTTACAAGGC
CAATGTGCTTTCTTTGCCCCTATTTATAATCAGAAAAAAAAAATTTTCCA
GAAAACAACTATTTTATTTACAAATTCCCTCTAAAAATTTTGAAACATTT
TTTTTGTGTTTGCAAATGGAGCCGGGAATAAATTTTCTTTATTTACAAAA
AACACCGGGAACCATTTTTTAAAAAAAAATTTAAAAAAAAAATTTTTTAT
TTTTGTGGAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e05.g1 MSMg01no134_e05.g1 CHROMAT_FILE:
MSMg01no134_e05.g1 PHD_FILE: MSMg01no134_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:30 2005
         (830 letters)



>mm_chr18_21825904_21827133
          Length = 1230

 Score = 1558 bits (806), Expect = 0.0
 Identities = 824/830 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaattttgcaacccaacatctagtatgacatcccttatattagaatagagatgctcaaag 60
            ||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 201  aaattgtgcaacccaacatctagtatgacattggttatattagaatagagatgctcaaag 260

                                                                        
Query: 61   tgttttctaacactggacaattgtaatgccatcatcccaaaacctgtagaaatgcagatt 120
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261  tgttttctaacactggacaattgtaatgccatcatcccaaaacctgcagaaatgcagatt 320

                                                                        
Query: 121  cttagactctcttccacatctactaaaatagagactctggaggagctgaggaagtgcaac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  cttagactctcttccacatctactaaaatagagactctggaggagctgaggaagtgcaac 380

                                                                        
Query: 181  agtttatggctctaaagccttctaggtaattatgatggcggcttacatctgagaaccaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  agtttatggctctaaagccttctaggtaattatgatggcggcttacatctgagaaccaat 440

                                                                        
Query: 241  gttctagaagaatctagccatatcttcacatcagcacactgagaatgcttaaaagttaat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  gttctagaagaatctagccatatcttcacatcagcacactgagaatgcttaaaagttaat 500

                                                                        
Query: 301  attccttaatgtactcacccaattgaaatactagagagatttccagatgttaacaattga 360
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501  attccttaatgtactcacccaagtgaaatactagagagatttccagatgttaacaattga 560

                                                                        
Query: 361  acagttagttatattatttttatctcatgcatctttagtctgtagataactgggtcaggt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  acagttagttatattatttttatctcatgcatctttagtctgtagataactgggtcaggt 620

                                                                        
Query: 421  aatatgactcagtcttagcattaataatcatacctgatttcactctttgagttgctgaca 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  aatatgactcagtcttagcattaataatcatacctgatttcactctttgagttgctgaca 680

                                                                        
Query: 481  taaaaaacctgcaatagagtcaagtatcgcatctaagtgaatgcaagctgatgggaacag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  taaaaaacctgcaatagagtcaagtatcgcatctaagtgaatgcaagctgatgggaacag 740

                                                                        
Query: 541  ggcagttcacacaaacacttgctacatcatgcttaattattttctctctattgatgctta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  ggcagttcacacaaacacttgctacatcatgcttaattattttctctctattgatgctta 800

                                                                        
Query: 601  tctcacatcaaatactagagttggcaaaagaaatacttaataaatgaacacttaactgaa 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  tctcacatcaaatactagagttggcaaaagaaatacttaataaatgaacacttaactgaa 860

                                                                        
Query: 661  tgatattttaaatgtgatttgttaatgaactaaggataaaaatcaatgggagttttaagc 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  tgatattttaaatgtgatttgttaatgaactaaggataaaaatcaatgggagttttaagc 920

                                                                        
Query: 721  caaattcattcccacagacacaggactttattttttattttttaaaatttcaactttctt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  caaattcattcccacagacacaggactttattttttattttttaaaatttcaactttctt 980

                                                              
Query: 781  actacaaatttgacatcaagacatttgaaaaaggttagtgctgacctaga 830
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  actacaaatttgacatcaagacatttgaaaaaggttagtgctgacctaga 1030


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 830
Length of database: 1230
Length adjustment: 10
Effective length of query: 820
Effective length of database: 1220
Effective search space:  1000400
Effective search space used:  1000400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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