Query= MSMg01no135_j09.b1 MSMg01no135_j09.b1 CHROMAT_FILE:
MSMg01no135_j09.b1 PHD_FILE: MSMg01no135_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:45 2005
(642 letters)
>mm_chr18_54966734_54967775
Length = 1042
Score = 787 bits (407), Expect = 0.0
Identities = 431/439 (98%)
Strand = Plus / Minus
Query: 4 ggaattccatatgtaccagccagcaatctgcagtttgcctgaaaccatgaaaaagagaca 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaattccatatgtacaagccagcaatctgcagtttgcctgaaaccatgaaaaagagaca 380
Query: 64 ccggggagcagaaaagcacactcagctcaatgggcgctcaaatatggcagtcactgggaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccggggagcagaaaagcacactcagctcaatgggcgctcaaatatggcagtcactgggaa 320
Query: 124 caggaagcggaaactgctgtttccttggtagctttattgtttatgctgctgctgctgtcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caggaagcggaaactgctgtttccttggtagctttattgtttatgctgctgctgctgtcc 260
Query: 184 agacccctcccacctcgccctccctattgacccacgttgatcttcccgcccctctctttc 243
|| |||||||||||||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct: 259 agccccctcccacctcgccctccctatcgacccatgctgatcttcccgcccctctctttc 200
Query: 244 ttttaactttttatttactctgtgaattttacatcaagcaccccaatcccactcatattc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttttaactttttatttactctgtgaattttacatcaagcaccccaatcccactcatattc 140
Query: 304 ttgtaacctcactctcaaaagaaaatagaaaataatcacaataataaaatttaaaaataa 363
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ttgtaacctcactcgcaaaagaaaatagaaaataatcacaataataaaatttaaaaataa 80
Query: 364 gacaaaacaaaatatcttgtcacgaaaacttcaatgtgtcccagtgtgtcccatagtaca 423
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 79 aacaaaacaaaatatcttgtcacgaaaacttcaatgtgtcccagggtgtcccatagtaca 20
Query: 424 accttctgcctacatatct 442
|||||||||||||||||||
Sbjct: 19 accttctgcctacatatct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_j09.g1 MSMg01no135_j09.g1 CHROMAT_FILE:
MSMg01no135_j09.g1 PHD_FILE: MSMg01no135_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:45 2005
(594 letters)
>mm_chr18_54901082_54902074
Length = 993
Score = 1112 bits (575), Expect = 0.0
Identities = 590/595 (99%), Gaps = 2/595 (0%)
Strand = Plus / Plus
Query: 1 cccactgtcatctattcttgctatttgtccaccctcattccatcccaggtggatggagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccactgtcatctattcttgctatttgtccaccctcattccatcccaggtggatggagct 260
Query: 61 ccccactacatcttctatacagcttctggaaatagaagtagaactctcctgggaaggttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccactacatcttctatacagcttctggaaatagaagtagaactctcctgggaaggttc 320
Query: 121 ccactgttttttttcagccatcattttctttcaggctactaattactattggttacatta 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgttttttt-cagccatcattttctttcaggctactaattactattggttacatta 379
Query: 181 tttgtcatcatccttaattgagcatgaacaatgctaaacgctgtaaagaaaatgttagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgtcatcatccttaattgagcatgaacaatgctaaacgctgtaaagaaaatgttagag 439
Query: 241 gggagtcatttcattgaagccagaggatttggagctgactcaaatgggaagaataatgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gggagtcatttcattgaagccagaggatttggagctgactcaaatgggaagaataatgag 499
Query: 301 agatggaaattctgccatgatcaggtggccactgttcagctctgtggaatgtagaacttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 500 agatggaaattctgccatgatcaggtggccactgttcagctctgtggaatgtagaacctc 559
Query: 361 cctgtatggataaagagcagccatttgtggtggtttgtatatgcttgggccaatggagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctgtatggataaagagcagccatttgtggtggtttgtatatgcttgggccaatggagta 619
Query: 421 gcactatttggaggtatggccttgttggagtaggtgtggcctggttggaggaagtgtgtc 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 620 gcactatttggaggtatggccttgttggagtaggtgtggcctggttgaaggaagtgtgtc 679
Query: 481 attacgggcgtgggctttgaagaccctgatcctaactccctggaagccagtcttctcctg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attacgggcgtgggctttgaagaccctgatcctaactccctggaagccagtcttctcctg 739
Query: 541 tttgccttgggaaaaaaa-acagaactctcagatcctcctataccatgctcccac 594
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 tttgcctttggaaaaaaatacagaactctcagatcctcctataccatgctcccac 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
