Query= MSMg01no136_f12.b1 MSMg01no136_f12.b1 CHROMAT_FILE:
MSMg01no136_f12.b1 PHD_FILE: MSMg01no136_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:42 2005
(476 letters)
>mm_chr18_69795672_69796547
Length = 876
Score = 727 bits (376), Expect = 0.0
Identities = 448/498 (89%), Gaps = 44/498 (8%)
Strand = Plus / Plus
Query: 12 tccaccacctcttcctctgtggtctatggccagactggttctgaaattctaactccagaa 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tccaccacctcttcctctgtggtctatggccagactggttctgaaattctaactccagaa 249
Query: 72 tttaaaaagtcgggggggtgggggagacaggggttggtgggagacagcttcatgaaataa 131
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||
Sbjct: 250 tttaaaaagtcggggggggggggga-acaggggttgg---gagacagcttcatgaaataa 305
Query: 132 aata--------------------------tcagatgaaatttgcctgattcaaaaggct 165
|||| ||||||||||||||||||||||||||||||
Sbjct: 306 aataaaatatcagatgaaataaataaaatatcagatgaaatttgcctgattcaaaaggct 365
Query: 166 atgagtacatacatgttactgtggaaataggcttgttttcaacaaggaatgcctaactac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgagtacatacatgttactgtggaaataggcttgttttcaacaaggaatgcctaactac 425
Query: 226 cttcaacgacaagctgatgacctggtgtgaatccagtactcgattttgtccttaagctaa 285
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 426 cttcaacgacaagctgatgacctggtgtgaatccagtactcgatttcgtccaaaagctaa 485
Query: 286 gagaggggaaagtctgggaatgaactaaccttgcttgcttgacatagttccgcagagaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagaggggaaagtctgggaatgaactaaccttgcttgcttgacatagttccgcagagaaa 545
Query: 346 catgctctgttcgtttgcagttgaccccccctt-------aagttctttttttctctttt 398
|||||||||||| ||||||| ||| || ||||||||||||||||||||
Sbjct: 546 catgctctgttcttttgcagctga-------tttatttttaagttctttttttctctttt 598
Query: 399 gctaagaacacaaacttaaacgtttctgtttgtttgacaatataaaaagccacttgggaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gctaagaacacaaacttaaacgtttctgtttgtttgacaatataaaaagccacttgggaa 658
Query: 459 aaaagtaacgatgactgt 476
||||||||||||||||||
Sbjct: 659 aaaagtaacgatgactgt 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f12.g1 MSMg01no136_f12.g1 CHROMAT_FILE:
MSMg01no136_f12.g1 PHD_FILE: MSMg01no136_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:42 2005
(543 letters)
>mm_chr18_69959012_69959954
Length = 943
Score = 967 bits (500), Expect = 0.0
Identities = 533/544 (97%), Gaps = 2/544 (0%)
Strand = Plus / Minus
Query: 1 cagttgagttggggagtaattggagagagagaaaggaaggggtgctaagcagtaacaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagttgagttggggagtaattggagagagagaaaggaaggggtgctaagcagtaacaccc 684
Query: 61 aggcttccctagtcacgagatggttttgctatacattacctatcagagaaatgcaggctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gggcttccctagtcacgagatggttttgctatacattacctatcagagaaatgcaggctt 624
Query: 121 gtgtcagcgcattttggaaggaccaatcctaaggtagttctctcctctctggttggcaaa 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 623 gtgtcagcgcattttggaaggaccaatcctaagttagttctctcctctctggttggcaaa 564
Query: 181 taatcactcagtgtccagataaactatgggaagtctattagatttgaagctttcatatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 taatcactcagtgtccagataaactatgggaagtctattagatttgaagctttcatatta 504
Query: 241 ttctgaatatgagagagcagcctatgtatggttagcaagggtgatcttgtagtagccagt 300
|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 503 ttctgaatatgagagagcagcctatgtaaggtcagcaagggtgatcttgtggtagccagc 444
Query: 301 aagggtgacttgtggcttaagctaaggaaatgaaaaga-tcaacagctgcagctgccttc 359
|||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 443 aagggtgacttgtggcttaagctaaggaaatgaaaagattgaa-agctgcagctgccttc 385
Query: 360 agatagatttgaatcagaagaaaaatgaaaatccttgtgtttttccaaagaagtttttca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatagatttgaatcagaagaaaaatgaaaatccttgtgtttttccaaagaagtttttca 325
Query: 420 gttataccaccagacgatacaggtccttaaacaaggatgtgagcaagtttaagccttaac 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttataccaccagacgatacaagtccttaaacaaggatgtgagcaagtttaagccttaac 265
Query: 480 agtattcttcagataaatatggattataacaggatggtagggaatccggaaactgaattt 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 agtattcttcagataaatatggattatgacaggatggtagggaatccggaaactgaattt 205
Query: 540 agtg 543
||||
Sbjct: 204 agtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
