Query= MSMg01no137_j21.b1 MSMg01no137_j21.b1 CHROMAT_FILE:
MSMg01no137_j21.b1 PHD_FILE: MSMg01no137_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:22 2005
(644 letters)
>mm_chr18_74267821_74268864
Length = 1044
Score = 1079 bits (558), Expect = 0.0
Identities = 624/658 (94%), Gaps = 23/658 (3%)
Strand = Plus / Plus
Query: 2 gaattcctgatccttctccctccacctcccaacagccatcaacttttattacagaaaaat 61
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 200 gaattcctgatccttctgcctccacctcccaacagccaacaacttttattacagaaaaat 259
Query: 62 tctagagccgggcgtggtggcgcacgcctttagtcccagagaggcagagacaagcggatt 121
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 260 tctagagccgggcgtggtggcacacgcctttagtcccagagaggcagagacaggcggatt 319
Query: 122 tctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacag 379
Query: 182 agaaaccttgcctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaagcaagctgagcaa--- 238
|||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 380 agaaaccttgcctcgaaaaaccaaaaaaaaaaaaaaaaaaaaaa--aa----a--aaaaa 431
Query: 239 -------gcaagctgagcaagccaggggaagcaagtagcatccctccttggtctctgcat 291
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct: 432 aaaaaaagcaagctgagcaagccaggggaagcaagtaacatccctccatagtctctgcat 491
Query: 292 cagctcctgcttcctgacctgcttgagttccagtcctgacttccttggtgatgaacagca 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cagctcctgcttcctgacctgcttgagttccagtcctgacttccttggtgatgaacagca 551
Query: 352 atgtggaagtgtaagctgaacaaaacctttccttcccaacttgcttcttggtcatgatgt 411
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 552 atgtggaagtgtaagctgaacaaaccctttccttcccaacttgcttcttggtcatgatgt 611
Query: 412 ttgtgcaggcatagaaaccctgactaagacactccctgaaacaaagcttctccagctcca 471
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 612 ttgtgcaggaatagaaaccctgactaagacactccctgaaacaaagcttcttcagctcca 671
Query: 472 gcccctgtatgaaaatattagctctctgtagtcctttctccatgcattttgtacatctat 531
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 672 gcccctgtatgaaaatattagctccctgtagtcctttctccatgcattttgtacatctat 731
Query: 532 aatgaactaaaggcatggctgtaaggccattgcgtaaatacctcagcatgtgttcttcaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aatgaactaaaggcatggctgtaaggccattgcgtaaatacctcagcatgtgttcttcaa 791
Query: 592 tgttgagaacctttacaggacaaccattaaactgtgt-----tcaaggaaatttccaa 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 792 tgttgagaacctttacaggacaaccattaaactgtgtcacattcaaggaaatttccaa 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_j21.g1 MSMg01no137_j21.g1 CHROMAT_FILE:
MSMg01no137_j21.g1 PHD_FILE: MSMg01no137_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:22 2005
(639 letters)
>mm_chr18_74348323_74349361
Length = 1039
Score = 872 bits (451), Expect = 0.0
Identities = 484/501 (96%), Gaps = 10/501 (1%)
Strand = Plus / Minus
Query: 1 caatacagccagagatgtagaaaacaaaacaaaacaaccctctgtcttgaaaaacaacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caatacagccagagatgtagaaaacaaaacaaaacaaccctctgtcttgaaaaacaacag 432
Query: 61 caataacaaaaagtgagataggttcttacagagaaagacagattaaggatacatactgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caataacaaaaagtgagataggttcttacagagaaagacagattaaggatacatactgac 372
Query: 121 acgtatcagctacatacataagaaacaatacacagatatccctgcgtctttggaaacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acgtatcagctacatacataagaaacaatacacagatatccctgcgtctttggaaacagg 312
Query: 181 acctgatttcacttcccagtacctatttcaggtgcattgcacaacactcactgcagcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 311 acctgatttcacttcccagtacctatttcaggtgcattgcacaacactcactgcagcctg 252
Query: 241 cggagatctaacatactcctctggcttcctagggcacctgcatagatgtggtataatagt 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aggatatctaacatactcctctggcttcctagggcacctgcatagatgtggtataatagt 192
Query: 301 caaagctatctagagtaagataacttataggacacacacacacacacacacacacacaca 360
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 191 caaagctatctagaataagacaacttataggacacacacacgcacacacacacacacaca 132
Query: 361 cacacacacacacacatgatttattagagtgactcgtgggttatggtccagataatccaa 420
||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 131 cacacac----------gatttattagagtgactcgtgagttatggtccagataatccaa 82
Query: 421 caacggctgcttctgaatggaaggtccaagaacccagaagttagttgttcagtccatgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 caacggctgcttctgaatggaaggtccaagaacccagaagttagttgttcagtccatgag 22
Query: 481 gctggatgtttcagttgggct 501
|||||||||||||||||||||
Sbjct: 21 gctggatgtttcagttgggct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
