BAC Information

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BAC

Clone NameMSMg01-137P07
Chromosome18 (Build37)
Map Location 85,537,167 - 85,537,607
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137P07.T7 (MSMg01no137_p07.b1)MSMg01-137P07.TJ (MSMg01no137_p07.g1)
ACCAG343747AG343748
length724724
length of high quality
(start - end)
415 (47 - 461)438 (74 - 511)
definitionCHROMAT_FILE: MSMg01no137_p07.b1 PHD_FILE: MSMg01no137_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:50 2005CHROMAT_FILE: MSMg01no137_p07.g1 PHD_FILE: MSMg01no137_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGACCGCGG
AATTCTTTGTTCTGCCATGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATCTTTCCCCTGTTTCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGACAACAACCAGCTGTGCCAGCACCAATTGTTGAAAATG
CTGCCCCTCTTCCACTGTATGGTTTTAGCTCCCTTGTCTAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGCCTTCAAATCTATTCCACCGGC
CTATTTGTCTCGCTCTATACCAGTACCATGCAGTTCTTATCATTATTGTC
CTGTAGTAAAGCTTTATTTCAGGCACGGTGATTCCACCCCAATTTCTTTA
CCCTTGTCAACACCTTTTGCCACC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGTATATTTCTATCTCATTGCTTGCT
TCCTGCCTGAAGAATGAAGAAAGCTATGGAGCATGCAGTTTGTCATTGTG
AATGTGAGGTATGAGTCTCTCCTGGGATTTTTTTTAAGGAAATTGTATTG
GATATGTTCCTGAGGAATTGAGGTGGCAGCTGTAGGGCCATGATGCATAG
TTTAGTAAGTCACTACAGTTTCAGCCCCCAGCACTCAAGGGGCCCTAAAG
ACAGGTAAACCCTGTGATATTTCCCAGTTTCTCACTAGGGGTCTGGAAAA
CAGAGATGGTCATTCTTGCAGAGCAAGAAACTGTGCTGCAAGAAACTGTG
TTACACATGCATTTACCTGTAAAGGTTCACCAAGACCCACTGAGTCTGAA
TCCTCATTCCTCATAGAATAGGGAAGAAAATAGAGGCTGTGAGGTAGCCT
TTCCATTCAAGACTCTGATACTTTGGGAATAGACTCACCCACTGAAACTG
ATGCATGGAGTGCAAGTTTCTGGCTGTGCCATGTTAGACCTCAGCAAAAT
AACACTCATGTGGTGTTTTGCTGAGGCAAGACCTGTGTGAGAATACATGA
TGTTTGTAGAGATCACATATAGGACTCAATGGCCAGTGTAGGCGCCCTTG
CATAGTTAGCCCGCCTATGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_p07.g1 MSMg01no137_p07.g1 CHROMAT_FILE:
MSMg01no137_p07.g1 PHD_FILE: MSMg01no137_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:50 2005
         (438 letters)



>mm_chr18_85536967_85537807
          Length = 841

 Score =  775 bits (401), Expect = 0.0
 Identities = 430/441 (97%), Gaps = 3/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtatatttctatctcattgcttgcttcctgcctgaagaatgaagaaagctatggagca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 641 aagtatatttctatctcattgcttgcttcctgcctgaacaatgaagaaagctatggagca 582

                                                                       
Query: 61  tgcagtttgtcattgtgaatgtgaggtatgagtctctcctggga---ttttttttaagga 117
           |||||||||||||||||||||||||||||||||||||| |||||   |||||||||||||
Sbjct: 581 tgcagtttgtcattgtgaatgtgaggtatgagtctctcttgggatttttttttttaagga 522

                                                                       
Query: 118 aattgtattggatatgttcctgaggaattgaggtggcagctgtagggccatgatgcatag 177
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 521 aattgtattggatatgttcctgaggaactgaggtggcagctgtagggccatgatgcatag 462

                                                                       
Query: 178 tttagtaagtcactacagtttcagcccccagcactcaaggggccctaaagacaggtaaac 237
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 461 tttagtaagtcactacagtttcagcacccagcactcaaggggccctaaagacaggtaaac 402

                                                                       
Query: 238 cctgtgatatttcccagtttctcactaggggtctggaaaacagagatggtcattcttgca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cctgtgatatttcccagtttctcactaggggtctggaaaacagagatggtcattcttgca 342

                                                                       
Query: 298 gagcaagaaactgtgctgcaagaaactgtgttacacatgcatttacctgtaaaggttcac 357
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 341 gagcaagaaactgtgttgcaagaaactgtgttacacatgcatttacctggaaaggttcac 282

                                                                       
Query: 358 caagacccactgagtctgaatcctcattcctcatagaatagggaagaaaatagaggctgt 417
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 281 caagacccactgagtctgaatccacattcctcatagaagagggaagaaaatagaggctgt 222

                                
Query: 418 gaggtagcctttccattcaag 438
           |||||||||||||||||||||
Sbjct: 221 gaggtagcctttccattcaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 841
Length adjustment: 9
Effective length of query: 429
Effective length of database: 832
Effective search space:   356928
Effective search space used:   356928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)