Query= MSMg01no138_d22.b1 MSMg01no138_d22.b1 CHROMAT_FILE:
MSMg01no138_d22.b1 PHD_FILE: MSMg01no138_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:13 2005
(550 letters)
>mm_chr18_17590663_17591612
Length = 950
Score = 986 bits (510), Expect = 0.0
Identities = 537/546 (98%)
Strand = Plus / Plus
Query: 5 ggaattcaaatgcaggtgcctaatttattcaaggcaggatgtttctaggtggcacagcat 64
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaaatgcaggggactaatttattcaaggcaggatgtttctaggtggcacagcat 264
Query: 65 ttagatggtttgaattactgctcactgctctagcctgatttacactgaatgaacagaaag 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagatggtttgaattactgctcagtgctctagcctgatttacactgaatgaacagaaag 324
Query: 125 tgaaacagaattgtgggaaaatatgcagtttcctggagagaggtcggtggatcaattcac 184
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 325 tgaaacagaattgtgggaaaatatgcagcttcctggagagaggtcggtggatcaactcac 384
Query: 185 aacagtggacagagtagaagttaggataaagtgattagaaaaatgaaagataaaacagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 385 aacagtggacagagtagaagttaggataaagtgattagaaaaatgaaagatgaaacagag 444
Query: 245 gacagactctgtgtatgtcttttctatttgaagtactatatactttcttgaattttcctt 304
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 gacagactctgtgtatgtcttttctatttgaagtactatatactttctagaattttcctt 504
Query: 305 tttggcttagtaacttaaagtcattccaaacattcagtttttaaaataactctcaacacc 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 tttggcttagtaacttaaagtcattccaaacattcagcttttaaaataactctcaacacc 564
Query: 365 tttgagatgattgatctgaaagcatgctcatctcaggtaagaaaagaaaaaatctcaaga 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 tttgagatgattgatctgaaagcatgctcatctcaggtaagaaaagaaaaaaactcaaga 624
Query: 425 attctatatcaagaaacaatatcctgaaaattggaatgtgggattggtgtcctgagggta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attctatatcaagaaacaatatcctgaaaattggaatgtgggattggtgtcctgagggta 684
Query: 485 atgatcatctgggcaaggctcaaggctgtaaaaatacaaatttattttaatggaaaatta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgatcatctgggcaaggctcaaggctgtaaaaatacaaatttattttaatggaaaatta 744
Query: 545 ctggac 550
||||||
Sbjct: 745 ctggac 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_d22.g1 MSMg01no138_d22.g1 CHROMAT_FILE:
MSMg01no138_d22.g1 PHD_FILE: MSMg01no138_d22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:13 2005
(504 letters)
>mm_chr18_17846526_17847430
Length = 905
Score = 938 bits (485), Expect = 0.0
Identities = 500/505 (99%), Gaps = 1/505 (0%)
Strand = Plus / Minus
Query: 1 ttgtgaatac-agatggaaaattctgtgtatagtggaggaaatagaaagagattagggac 59
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 705 ttgtgaatacaagatggaaaattctgtgtatagtggaggaaatagaaagagattggggac 646
Query: 60 ttcagaatattctaaaaaccatcagagaaagactcagataaaacctgatgtgccctccct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttcagaatattctaaaaaccatcagagaaagactcagataaaacctgatgtgccctccct 586
Query: 120 cagctaggtttgtgcatgtctcccagctcttgtttcccttacatttcaccgagtcatgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cagctaggtttgtgcatgtctcccagctcttgtttcccttacatttcaccgagtcatgaa 526
Query: 180 acagacaagacagagcactgtggttattttcccttatttttttcagtacttcctatattt 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acagaaaagacagagcactgtggttattttcccttatttttttcagtacttcctatattt 466
Query: 240 gactacatcttttataacagttaattaaataacttcatatagtctcctagcaatgcataa 299
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gactaaatcttttagaacagttaattaaataacttcatatagtctcctagcaatgcataa 406
Query: 300 aatttcagtggccatgctaggcgtcttctgcaatgcaatgtgataatgttcgtatcagtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatttcagtggccatgctaggcgtcttctgcaatgcaatgtgataatgttcgtatcagtg 346
Query: 360 aaatttatctaggtggataattgtgaggcatatgttctctatgaatccctgggcaacata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaatttatctaggtggataattgtgaggcatatgttctctatgaatccctgggcaacata 286
Query: 420 gatatccatgagttcagcccaccagaaaaaaatgtaagcttatcaaaatatttttgttag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gatatccatgagttcagcccaccagaaaaaaatgtaagcttatcaaaatatttttgttag 226
Query: 480 tctgacaatcctgtaacctgagttc 504
|||||||||||||||||||||||||
Sbjct: 225 tctgacaatcctgtaacctgagttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space: 442130
Effective search space used: 442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
