Query= MSMg01no139_c22.b1 MSMg01no139_c22.b1 CHROMAT_FILE:
MSMg01no139_c22.b1 PHD_FILE: MSMg01no139_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
(665 letters)
>mm_chr18_55805097_55806162
Length = 1066
Score = 716 bits (370), Expect = 0.0
Identities = 455/518 (87%), Gaps = 59/518 (11%)
Strand = Plus / Minus
Query: 7 attctctggctatcgc-agaagacagatgctatactgaaaaac-agagcatcaagttaag 64
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 517 attctctggctat-gcaagaagacagatgctatactgaaaaacaagagcatcaagttaag 459
Query: 65 acggcgtcttcggagctagctgtatatataaagctttcagcagggaagtgttccacttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acggcgtcttcggagctagctgtatatataaagctttcagcagggaagtgttccacttta 399
Query: 125 ttgacaacgtgatgcccagtccaatgaaacaatcatcaccaggaggtggctcctctccta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttgacaacgtgatgcccagtccaatgaaacaatcatcaccaggaggtggctcctctccta 339
Query: 185 ggacatttgcaaggtagccactgtaaaattgtacagatcagagctgggaaaagggcatgg 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggacatttgcaaggtagacactgtaaaattgtacagatcagagctgggaaaagggcatgg 279
Query: 245 ttgtctaatttagttgtcaaataaggaaatggctttcagagaaatgtgaaagcagccagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttgtctaatttagttgtcaaataaggaaatggctttcagagaaatgtgaaagcagccagc 219
Query: 305 caagatgggttttctttctttctttctctctctct--ccctctctctctccctctctctc 362
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct: 218 caagatgggttttctttctttctttctctctctctttctctctctctctctctctctctc 159
Query: 363 tccctctctctctc-c-------------------------------ccctctctctctc 390
|| ||||||||||| | |||||||||||||
Sbjct: 158 tctctctctctctctctctctctctctctctctttctctctctctctccctctctctctc 99
Query: 391 tctctctctctctctct----------------------tttattttgttttgagggggc 428
||||||||||||||||| |||||||||||||||||||||
Sbjct: 98 tctctctctctctctctctctctccctctctctctctcttttattttgttttgagggggc 39
Query: 429 cagtatatttttaccaaagcaactaacagaagtaaagt 466
||||||||||||||||||||||||||||||||||||||
Sbjct: 38 cagtatatttttaccaaagcaactaacagaagtaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1066
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1056
Effective search space: 691680
Effective search space used: 691680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_c22.g1 MSMg01no139_c22.g1 CHROMAT_FILE:
MSMg01no139_c22.g1 PHD_FILE: MSMg01no139_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
(645 letters)
>mm_chr18_55699472_55700516
Length = 1045
Score = 1218 bits (630), Expect = 0.0
Identities = 642/646 (99%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 1 agtaatagaaacatggcttgggggagctaaggtaggaatgccatataggcctggtgtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatagaaacatggcttgggggagctaaggtaggaatgccatataggcctggtgtcaa 260
Query: 61 tttctatgcttgtttacttattaaagaaggtagaagttagttatattcagttatcggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctatgcttgtttacttattaaagaaggtagaagttagttatattcagttatcggaag 320
Query: 121 agctatccagctgaaagtgggtctaaaaaattatagctcaatcaaaacctgatgaatttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctatccagctgaaagtgggtctaaaaaattatagctcaatcaaaacctgatgaatttc 380
Query: 181 ttgagagatgccttctcccttgctagaacagtctaacaaacctccttcaaatcatttgac 240
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ttgagagatgccttctcccttgctagaacagtctaacaaaccaccttcaaatcatttgat 440
Query: 241 ccaaagaagatatgagacaagaactagtttattccactttaaatatttttgattgacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaagaagatatgagacaagaactagtttattccactttaaatatttttgattgacaca 500
Query: 301 tgaaagctgtatatatcatggggtacagtgtgttgttttgatacatgtatgtttgtaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaagctgtatatatcatggggtacagtgtgttgttttgatacatgtatgtttgtaatg 560
Query: 361 atcaaatgaggattgctatcatatcaattaccttagacatttatcattttgacactagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaaatgaggattgctatcatatcaattaccttagacatttatcattttgacactagga 620
Query: 421 tttgttattcaaaagtacaaaccaaaataataaataataacaaatgagcaaataataata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgttattcaaaagtacaaaccaaaataataaataataacaaatgagcaaataataata 680
Query: 481 attagctaataataagtgaggattcatttcttagaggggttctcctgtggacaaatgcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attagctaataataagtgaggattcatttcttagaggggttctcctgtggacaaatgcta 740
Query: 541 tttatgactaaggggacagcatcaaacacctataatgctgtgaggacatgtagctactgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttatgactaaggggacagcatcaaacacctataatgctgtgaggacatgtagctactgt 800
Query: 601 tgtgc-gagttactctgatatccttagctgctctcccatttacata 645
||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgt-ctgagttactctgatatccttagctgctctcccatttacata 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
