CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCATTGAAAATCCCTGGGATAAACAAGGGATCCACCAAAGATTCACTAAT
CTTAGAAGCCAGGGTCAAGGGCTACACGCCCTTGCCATAGTTCCTATTTT
AGTCTATTGTATAGTCCACCTTCCCCTTAGGCCATTGTAAATACTTGTGT
ATGGGTGTAACTTCGATATAGTTCTAAGTATCTATTCTGGTTTCTCCTTT
GGTCTGAAACTTCCTTCTTCCTAGTGATGGTAAATTCCTGTGTAAGGGAG
TGACCTAGCTTTTATTAAAAGTGATAGTGTAGTACTAGAGACTATTCTGA
TTAGCAACATTCCTCCTGAATTTCAAGCCCATGATCTTCTTCAAGGATGT
TCTAGGACTGTTGGAACACTGGTGGAAGGCTTTAGCTATGTCATAATTCA
ATCTTAAAAGGCACTTATAATAGGAAAATACTGAAAGAGAACAGGTGGAT
CCATACACTAGACTAATGTGGGAATAGAAAATTAATGTATGGGTTAAAGG
GAACGCCAGACTCCAGGAGGAGAGCTTCCTTGAAGCTCTTTGCCTCATGA
GTGACTTTCAAGCCTCTCGGCTTAAGCTGACTCGACCAGATTCCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCCTCCTTCCTTCCTTCCTTCCTTC
CCTCCCTTCCTCCC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATCATAATCATGATGCTTCTTAGTGTA
ATTTTGTTCCCATATGGAATTTGGTTTGCTCTGTTTTGAAATACAAAATG
AGCATAGAATCATAAGCAAAATGATTAAAAATCCGTTTCCATTTACATCC
CCCAAAGGATGAGTCATCTGTCTTAAATGTTAATAATAAATCACAGTTTT
GCAGAATTGTTACGGGGGAATTATCATAATTTATGTCAGTGAATATTTTT
TTCCTTTTCTGAGGCTTCTTTTTCCTTCCATCAATTGTCATTTGCTGGCC
ATGGTTTTATTCTTGAGAACCGAGAAAGGAAACAAAGGCTGCCTTGCCTG
TACTGGGAGAGAATAGTATTTCATCTTTGTTGACCTTCACAGAAACCTTT
AGAGGAAAGCATTATTATTCCTATTCACAGACTGTGGATCAGAAAGGTTA
AATCATTTTGCAAGGTCACCATCTTGATGAATATCAGAAATGATTTCTGC
TGAATTTTCTCAGTATAATAAGCCACACTGTATACTGCAGTGAGAGACAG
GAGCTCACAGGTCTGGTAGAAATACCTTTACTAGGTCATTAGCAGGACCG
TCCATGGTGATCCCTTAATGAACCAGGCAATTGATCCGCGGGTTGTTCCT
CAAATCGAGTG

Query= MSMg01no139_j11.g1 MSMg01no139_j11.g1 CHROMAT_FILE:
MSMg01no139_j11.g1 PHD_FILE: MSMg01no139_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:02 2005
         (576 letters)



>mm_chr18_31061266_31062241
          Length = 976

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%), Gaps = 2/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatcataatcatgatgcttcttagtgtaattttgttcccatatggaatttggtttgctct 61
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatcataatcatgatacttcttagtgtaattttgttcccatatggaatttggtttgctct 490

                                                                       
Query: 62  gttttgaaatacaaaatgagcatagaatcataagcaaaatgattaaaaatccgtttccat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttttgaaatacaaaatgagcatagaatcataagcaaaatgattaaaaatccgtttccat 430

                                                                       
Query: 122 ttacatcccccaaaggatgagtcatctgtcttaaatgttaataataaatcacagttttgc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttacatcccccaaaggatgagtcatctgtcttaaatgttaataataaatcacagttttgc 370

                                                                       
Query: 182 agaattgttacgggggaattatcataatttatgtcagtgaatatttttttccttttctga 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 369 agaattgttacgggggaattatcataatttatgtcagtgaatttttttttccttttctga 310

                                                                       
Query: 242 ggcttctttttccttccatcaattgtcatttgctggccatggttttattcttgagaaccg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggcttctttttccttccatcaattgtcatttgctggccatggttttattcttgagaaccg 250

                                                                       
Query: 302 agaaaggaaacaaaggctgccttgcctgtactgggagagaatagtatttcatctttgttg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agaaaggaaacaaaggctgccttgcctgtactgggagagaatagtatttcatctttgttg 190

                                                                       
Query: 362 accttcacagaaacctttagaggaaagcattattattcctattcacagactgtggatcag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 accttcacagaaacctttagaggaaagcattattattcctattcacagactgtggatcag 130

                                                                       
Query: 422 aaaggttaaatcattttgcaaggtcaccatcttgatgaatatcagaaatgatttctgctg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aaaggttaaatcattttgcaaggtcaccatcttgatgaatatcagaaatgatttctgctg 70

                                                                       
Query: 482 aattttctcagtataataagccacactgtatactgcagtgagagacaggagctcac-agg 540
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || 
Sbjct: 69  aattttctcagtataataagccacattgtatactgcagtgagagacaggagctcacgag- 11

                
Query: 541 tctgg 545
           |||||
Sbjct: 10  tctgg 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)