Query= MSMg01no140_h14.b1 MSMg01no140_h14.b1 CHROMAT_FILE:
MSMg01no140_h14.b1 PHD_FILE: MSMg01no140_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:13 2005
(271 letters)
>mm_chr18_83940302_83940972
Length = 671
Score = 468 bits (242), Expect = e-136
Identities = 262/270 (97%), Gaps = 3/270 (1%)
Strand = Plus / Minus
Query: 5 gaattcattggtctgctgagtggcaaccttaagtgttgatctggcaagtgtgacatcgcc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaattcattggcctgctgagtggcaaccttaagtgttgatctggcaagtgtgacatcgcc 385
Query: 65 tggctttatgagtgtggcattcccctgccttcccgcctcccacttaagtgacattgtacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggctttatgagtgtggcattcccctgccttcccgcctcccacttaagtgacattgtacc 325
Query: 125 caccccccatccccacctccactggctgtgattattccattttagtggggagtcactttt 184
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcccccatccccacttccactggctgtgattattccattttagtggggagtcactttt 265
Query: 185 ctcttttagcgtcgcctgatgaacccattccttaggactaatgtaagaaattccagtgac 244
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttttttagcctcgcctgatgaacccattccttaggactaatgtaagaaattccagtgac 205
Query: 245 acaacaacaacaacaacaaca---gcaacg 271
||||||||||||||||||||| ||||||
Sbjct: 204 acaacaacaacaacaacaacaacagcaacg 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no140_h14.g1 MSMg01no140_h14.g1 CHROMAT_FILE:
MSMg01no140_h14.g1 PHD_FILE: MSMg01no140_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:13 2005
(386 letters)
>mm_chr18_83813642_83814427
Length = 786
Score = 723 bits (374), Expect = 0.0
Identities = 383/386 (99%)
Strand = Plus / Plus
Query: 1 attaaactgaaggtcattttcctctcagccctgtgaagaccaagtgacaagtctgagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaactgaaggtcattttcctctcagccctgtgaagaccaagtgacaagtctgagaga 260
Query: 61 aaacttggcattgtccctggacagagtgaagtgcctgtggagacagaaatgcagatgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttggcattgtccctggacagagtgaagtgcctgtggagacagaaatgcagatgtac 320
Query: 121 tatgcagctggacagtttgcgccaataccacgatcccactacttccatatgcccttggag 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tatgcagctggacagtttgcgccaataccatgatcccactacttccatatgcccttggag 380
Query: 181 ttcccaaaaccccatgtgaccccctaagatggcaccgcagagacaaatgtgttgtccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccaaaaccccatgtgaccccctaagatggcaccgcagagacaaatgtgttgtccagg 440
Query: 241 gctaatcaaacattgcttgtctcccgcacctctgacctgtcccagctgtgtgacccttga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaaacaaacattgcttgtctcccgcacctctgacctgtcccagctgtgtgacccttga 500
Query: 301 acaagtctttaacctcttacggtcacatggattcccaatgtcaaatcttatctgccacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 acaagtctttaacctcttacggtcacatggattcccaatgtcaaatcttatctgccatac 560
Query: 361 agttactacatgtgatgttttattgt 386
||||||||||||||||||||||||||
Sbjct: 561 agttactacatgtgatgttttattgt 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
