Query= MSMg01no141_h09.b1 MSMg01no141_h09.b1 CHROMAT_FILE:
MSMg01no141_h09.b1 PHD_FILE: MSMg01no141_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:53 2005
(471 letters)
>mm_chr18_39777523_39778393
Length = 871
Score = 837 bits (433), Expect = 0.0
Identities = 465/481 (96%), Gaps = 10/481 (2%)
Strand = Plus / Minus
Query: 1 tctttcccacttccagcttcaattctttgatcttctctctctgcagtccagctgcctgtc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tctttcccactttcagcttcaattctttgatcttctctctctgcagtccagctgcctgtc 805
Query: 61 --tttttttttttttcaattctttgacatttaattctctccccccatccagtgcttgaca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttttttttttttttcaattctttgacatttaattctctccccccatccagtgcttgaca 745
Query: 119 attcacacacacacacacgt--------acacacacacacacacacacacacacatgcac 170
||||||||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 744 attcacacatacacacatgtacacacacacacacacacacacacacacacacacatgcac 685
Query: 171 acacatatacaaaagttccaactccataacccataacttaccagcacccataactcatct 230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acacatatacaagagttccaactccataacccataacttaccagcacccataactcatct 625
Query: 231 tcacacacccactcattcccagctaacccctagaccctcaaagccagccctgactatcac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcacacacccactcattcccagctaacccctagaccctcaaagccagccctgactatcac 565
Query: 291 agttgcctctaacctgcaggttaggtctgatcctctccaattttgtctggaacactctca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agttgcctctaacctgcaggttaggtctgatcctctccaattttgtctggaacactctca 505
Query: 351 tgaaatgtactcttttaatttttttctctctgagcgtttgacttcgctggcaatcatata 410
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggaatgtactcttttaattcttttctctctgagcgtttgacttcgctggcaatcatata 445
Query: 411 gtcacttgggtaattccttattaaaggtagtccccaccctactttttgtaagccctctga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcacttgggtaattccttattaaaggtagtccccaccctactttttgtaagccctctga 385
Query: 471 g 471
|
Sbjct: 384 g 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_h09.g1 MSMg01no141_h09.g1 CHROMAT_FILE:
MSMg01no141_h09.g1 PHD_FILE: MSMg01no141_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:53 2005
(662 letters)
>mm_chr18_39598744_39599805
Length = 1062
Score = 1156 bits (598), Expect = 0.0
Identities = 646/662 (97%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 1 tgacatttgcctagtaggggtctggaggccattagcctttaaggttcccgaagtttttaa 60
|||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct: 201 tgacatttgcctagtaggggtctggagggtagtagcctttaaggttcatgaagtttttaa 260
Query: 61 gattatatgggcaccaaagagatatactgaagtaaatatgaaaattcagttctaatacat 120
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gattatatgggcaccagagagatatactgtagtaaatatgaaaattcagttctaatacat 320
Query: 121 cctcccctatctgtgaatagagaagaaattacttttttaaaaatagtatagaatagagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcccctatctgtgaatagagaagaaattacttttttaaaaatagtatagaatagagtt 380
Query: 181 tattcagggcatgggatagggagtcaagagggtagcagaggcagagagaggaagagagag 240
||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct: 381 tattcagggcatgggatagggagtcaaga-ggtagtagaggcagagagagggagagagag 439
Query: 241 aatagaggagtagaggccagccatgaacacatggagagagaggaacaaattactttttaa 300
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 aatagagaagtagaggccagccatgaacacaaggagagagaggaacaaattactttttaa 499
Query: 301 atatttaatatttgtaacttaatgatacaaaagcatctcatggtatttacattttcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatttaatatttgtaacttaatgatacaaaagcatctcatggtatttacattttcttta 559
Query: 361 gatccttattatattgaattaatctggtacacttgctttcacatttttattttaaaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gatccttattatattgaattaatctggtacacttgctttcacatttttattttaaaactc 619
Query: 421 atgtgagtcattaaaacactgtaatcatggagactacacatcaaaggctcagaagcagag 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgtgagtcattaaaacactataatcatggagactacacatcaaaggctcagaagcagag 679
Query: 481 acatgtcttatgtgctcaacaccattcttgatctcaagggagccttgaagtatactctat 540
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 680 acatgtcttatgcgctcaacaccattcttgatctcaggggagccttgaagtatactctat 739
Query: 541 gttggactcatgtactgggtggacgctggagtttgaatttcagagtccattcgtaaataa 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttggactcatgtactgggtggatgctggagtttgaatttcagagtccattcgtaaataa 799
Query: 601 aataaacagctatagagaagtcatttttaaaagtagaacagatactaaatagttaattta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aataaacagctatagagaagtcatttttaaaagtagaacagatactaaatagttaattta 859
Query: 661 ag 662
||
Sbjct: 860 ag 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
