Query= MSMg01no141_i11.b1 MSMg01no141_i11.b1 CHROMAT_FILE:
MSMg01no141_i11.b1 PHD_FILE: MSMg01no141_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:01 2005
(747 letters)
>mm_chr18_63574336_63575480
Length = 1145
Score = 1359 bits (703), Expect = 0.0
Identities = 736/747 (98%), Gaps = 2/747 (0%)
Strand = Plus / Plus
Query: 1 gcttaataatgaatatgcttgtgtgtatgcccttatacagagagaatactctactattta 60
|||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 201 gcttaataatgaatatgcttgtgtgtatgcacatatacagagagaatactttactattta 260
Query: 61 aaggaaatatacatattatacatattataaccaaatttctctcttaggtactaaatcatt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aaggaaatatacatattatacatattataaccaaatttctcccttaggtactaaatcatt 320
Query: 121 ccaaaacaatactttttattaaaacataatagagatggtctatcaaactttaaaagtcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaacaatactttttattaaaacataatagagatggtctatcaaactttaaaagtcca 380
Query: 181 tatgtgaggctgttttctttcaagtcagtaatagacaaatgataaactatttatgggatt 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgaggctgttttctttcaagtcactaatagacaaatgataaactatttatgggatt 440
Query: 241 cagttttctgagaaaaatccaccccataaacatttaaatgaagatatttgaaagtcggcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttttctgagaaaaatccaccccataaacatttaaatgaagatatttgaaagtcggcg 500
Query: 301 atcaaaactgttcatcattttctcctcctctatagagggattttaaatgttttttaacgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaaaactgttcatcattttctcctcctctatagagggattttaaatgttttttaacgt 560
Query: 361 ttaagacagtttctatgtttcatccccaatccaggagagactctggctttcggcactttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaagacagtttctatgtttcatccccaatccaggagagactctggctttcggcactttc 620
Query: 421 taaaggaaaggagatgaaggctgttttagaaaaaaaaccttagtaaagtctgtaagattt 480
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 621 taaaggaaagaagatgaaggctgttttagaaaaaaa-ccttaataaagtctgtaagattt 679
Query: 481 gggcagtttggactccgccgcagcttggttgcatcccatgtttcggtatggtaattgcag 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 680 gggcagtttggactccgccgcagcttggttgcatcccatgtttcggtttggtaattgtag 739
Query: 541 agatgtggtatttaatgacatacttttactgctctgtaattgttttatgctattctgcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agatgtggtatttaatgacatacttttactgctctgtaattgttttatgctattctgcag 799
Query: 601 ccaagatgaaaactagtaaagcatttttcatctctgtttttccttccctcggaggaaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ccaagatgaaaactagtaaagcatttttcatctctgtttttccttccctcggaggaaaaa 859
Query: 661 aaaaaaggaaaaagtgcaatgacatggaaaccactgtagtaaattagcagcagtctctct 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aaaaa-ggaaaaagtgcaatgacatggaaaccactgtagtaaattagcagcagtctctct 918
Query: 721 gctcagatgatcagaaacagtaggcca 747
|||||||||||||||||||||||||||
Sbjct: 919 gctcagatgatcagaaacagtaggcca 945
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1145
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1135
Effective search space: 836495
Effective search space used: 836495
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_i11.g1 MSMg01no141_i11.g1 CHROMAT_FILE:
MSMg01no141_i11.g1 PHD_FILE: MSMg01no141_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:02 2005
(708 letters)
>mm_chr18_63669524_63670630
Length = 1107
Score = 1203 bits (622), Expect = 0.0
Identities = 687/709 (96%), Gaps = 3/709 (0%)
Strand = Plus / Minus
Query: 1 ggcagagcttgagtgtagagacctcaaaccccccccccacagggacaaacttccttcaaa 60
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1048 ggcagagcttgagtgtagagacctcaaaacctgcccccacagggacaaacttccttcaaa 989
Query: 61 aaggctacagcaactccaacaaggtcacacacctcctaatagtgccacttctcatgggcc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 aaggccacagcaactccaacaaggtcacacacctcctaatagtgccacttctcatgggcc 929
Query: 121 aaacatattcaaaccaccacaggaggtcatgattattgatcttaattaggggtttagccc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 928 aaacatattcaaaccaccacaggaggtcataattattgatcttaattaggggtttagccc 869
Query: 181 attgttcaggtaggatgatcactggaatgaga-cccacatgtatgtataccacagccctg 239
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 868 attgttcaggtaggatgatcactggaatgagagccc-catgtatgtataccacagccctg 810
Query: 240 atccagatacctggaagtatctgtaaagaagattagctccttagctgtgtgtttctggct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 809 atccagatacctggaagtatctgtaaagaagattagctccttagctgtgtgttcctggct 750
Query: 300 gcttcctggctgccctggccatcaggtcttcttccaagcacagccttgctattcctttgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gcttcctggctgccctggccatcaggtcttcttccaagcacagccttgctattcctttgc 690
Query: 360 aggcagtatctgagctctttcctagcactggcctattgtccctatgtctgcctgctaggc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aggcagtatctgagctctttcctagcactggcctattgtccctatgtctgcctgctaggc 630
Query: 420 catgcccccgggcatcttatactcctctattatggagacttgcatcagtcacacatttgt 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 629 catgcccccgggcatcttatactcctctatcatggagacttgcatcagtcacacatttgt 570
Query: 480 tcatgacagtgtgctgaggggcatgcgtggttgatctggagcagctcaccctgagttctt 539
||||||||||||||||||| |||| ||||||||||||||| ||||||| | |||||||||
Sbjct: 569 tcatgacagtgtgctgaggagcattcgtggttgatctggaacagctcatc-tgagttctt 511
Query: 540 gctgcgttctttgagcttcttcctttagagtaagcctctgccaacatgtgacacaaacac 599
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gctgggttctttgagcttcctactttagagtaagcctctgccaacatgtgacacaaacac 451
Query: 600 agactgacacagctactccatgccagagaaccttagcttataccagtttgattttcctag 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 450 agactgacacagctactccatgccagagaaccttagcttacaccagtttgattttcctag 391
Query: 660 aaattanggaaagctgaagaatttaccatgacaatatgtcttccctttc 708
|||||| ||||| || |||||||||||| ||||||||||||||||||||
Sbjct: 390 aaattaaggaaaactaaagaatttaccaagacaatatgtcttccctttc 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1107
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1097
Effective search space: 765706
Effective search space used: 765706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
