Query= MSMg01no141_j07.b1 MSMg01no141_j07.b1 CHROMAT_FILE:
MSMg01no141_j07.b1 PHD_FILE: MSMg01no141_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:08 2005
(685 letters)
>mm_chr18_83550032_83551110
Length = 1079
Score = 1135 bits (587), Expect = 0.0
Identities = 658/685 (96%), Gaps = 6/685 (0%)
Strand = Plus / Plus
Query: 1 ttaaagttgaaccgtgaggatctgtttaccgttaaaatggttttgttccccaagagtcta 60
||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 201 ttaaagttgaaccatgaggatctgtttaaagttaaaatggttttgttaagcaagagtcta 260
Query: 61 ttctgcttatacagcccttcctaaattgtcattattagggtattgatatgataattaaga 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttct------acagcccttcctaaattgtcattattagggtattgatatgataattaaga 314
Query: 121 ttttattattaaaaatgataatataattaatgtattagaataaaactgtgtctgaccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttttattattaaaaatgataatataattaatgtattagaataaaactgtgtctgaccaga 374
Query: 181 aagtagaagatattttagaagcccatagctacttgagcctgttgtgaatacagcacagtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 375 aagtagaagatattttagaagcccatagctacttgagcctgttgtgaatatagcatagtt 434
Query: 241 gatgcctgttgatctggttttataatagttatttagatttcccatgaatgattcagatat 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 gatgcctgttgatctggttttataatagttatttagatttcccatgaaagattcagatat 494
Query: 301 caaatgcccagctgagattattgtatatatttcctgcagattttcaacagtcaataaatt 360
|| |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 495 cacatgcccagatgagattaaggtagatatttcctgcagattttcaacagtcaataaatt 554
Query: 361 accacattgtgtagctcatcttggaaatctgctggtctgcagaatgaaggctaatcatgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 accacattgtgtagctcatcttggaaatctgctggtctgcagaatgaaggctaatcatgg 614
Query: 421 ttctggttcttatttatattactgaacttcccatctgcatactaattgcttccaaactgt 480
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttctggttcttagttatattattgaacttcccatctgcatactaattgcttccaaactgt 674
Query: 481 ccgctgtgaattgtcctaagcttcattgggactttgtaccagcagggaccagaactggct 540
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 cggctgtgaattgtcctaagcttcattgtgactttgtaccagcagggaccagaactggct 734
Query: 541 ttaggggtggctgacacagagcctccttcagcctcaggcctgggagctggtagatacagc 600
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttatgggtggctgacacagagcctccttcagcctcaggcctgggagctggtagatacagc 794
Query: 601 tgagaggcagtccttctgcggtaagacagccccatactcagagtatgcaaatgcaaactc 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tgagaggcagtccttctgcgggaagacagccccatactcagagtatgcaaatgcaaactc 854
Query: 661 tggctgaactagtcacctagatgag 685
||||||||||||||||||||||||
Sbjct: 855 cggctgaactagtcacctagatgag 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1079
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1069
Effective search space: 721575
Effective search space used: 721575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_j07.g1 MSMg01no141_j07.g1 CHROMAT_FILE:
MSMg01no141_j07.g1 PHD_FILE: MSMg01no141_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:08 2005
(694 letters)
>mm_chr18_83691519_83692612
Length = 1094
Score = 996 bits (515), Expect = 0.0
Identities = 530/535 (99%)
Strand = Plus / Minus
Query: 1 tgaagagaaagggcaaggttagttctcccttcgcctgtcagaatcaaccgacaccagatg 60
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 535 tgaagagaaagggcaaggttagttctcagttcgcctgtcagaatcaactgacaccagatg 476
Query: 61 tacatgctcctaaggagagtcggccactccaggactagaacagcagagaaaagctcggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tacatgctcctaaggagagtcggccactccaggactagaacagcagagaaaagctcggcg 416
Query: 121 tggggagaccagggattatccttaggttacaagaagagagaatacaaagttccagcttgc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 415 tggggagaccagggattatccttaggttacaagaagagagaatgcaaagttccagcttgc 356
Query: 181 tttctatggcaaactgtaaatattaccatggacgaaactgtacatgtggatcgcaaggct 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 tttctatggcaaactgtaaatattaccatggatgaaactgtacatgtggatcgcaaggct 296
Query: 241 ggctgttctgaagagctggagtcctgaacctgtggctgttagcagtggtgcttggaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ggctgttctgaagagctggagtcctgaacctgtggctgttagcagtggtgcttggaaatc 236
Query: 301 gttgtctacaaggccagcagctccacatcttccctcctctctccctcccccttcccttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gttgtctacaaggccagcagctccacatcttccctcctctctccctcccccttcccttct 176
Query: 361 cctgcctcctccctcctcccctccatcctctgctgctgtgtccctctcctttcttgcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 cctgcctcctccctcctcccctccatcctctgctgctgtgtccctctcctttcttgcttc 116
Query: 421 cattgttatatgcctgactttgacctgagccttctacctgacctttagcctgccttcctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cattgttatatgcctgactttgacctgagccttctacctgacctttagcctgccttcctc 56
Query: 481 acataaagattagatggtgccagtgtagacagcccagagtaatctccccatctca 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 acataaagattagatggtgccagtgtagacagcccagagtaatctccccatctca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
