Query= MSMg01no143_b05.b1 MSMg01no143_b05.b1 CHROMAT_FILE:
MSMg01no143_b05.b1 PHD_FILE: MSMg01no143_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:31 2005
(543 letters)
>mm_chr18_47231134_47232076
Length = 943
Score = 839 bits (434), Expect = 0.0
Identities = 443/446 (99%)
Strand = Plus / Minus
Query: 98 tgtttcacagttaattctagaatattctcgccacctcaaagcaactccagacctcttgcc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 tgtttcacagttaattctagaatattctcgccacctcaaagcaactccagacctcttgcc 884
Query: 158 actgcctgctagcactgttaattactctgctctccaccttcaagccctgggcaggagtaa 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 actgcctgctagcactgttaattactctgctctccaccttcaagccctgggcaggagtaa 824
Query: 218 tctagtcttcattgattcgcctattctgaaaacaatataaaaatttaatacaatcatgta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tctagtcttcattgattcgcctattctgaaaacaatataaaaatttaatacaatcatgta 764
Query: 278 ttttatgactaatttttatctactgtgtttctatgacatagccacataggatgtaatgct 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ttttatgactaatttttatctactgtgtttctatgacatagccacataggatgtaatgct 704
Query: 338 aagcaaaaaaagtccaattaagtaaatgaaattgctggaattgaattataattccaattt 397
|||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 703 aagcaaaaaaagtccaatcaagtaaatgaaattgttggaattggattataattccaattt 644
Query: 398 aatatttcacgtatgatataaacatatacctaaacacagtacagaacaaaaatgctgaca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatatttcacgtatgatataaacatatacctaaacacagtacagaacaaaaatgctgaca 584
Query: 458 cagttttattttctttgacaattaaaataaaatatgtaatagcacatgaacatgactcac 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagttttattttctttgacaattaaaataaaatatgtaatagcacatgaacatgactcac 524
Query: 518 aaacacattttatttatttttaaaaa 543
||||||||||||||||||||||||||
Sbjct: 523 aaacacattttatttatttttaaaaa 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b05.g1 MSMg01no143_b05.g1 CHROMAT_FILE:
MSMg01no143_b05.g1 PHD_FILE: MSMg01no143_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:31 2005
(328 letters)
>mm_chr18_47071014_47071741
Length = 728
Score = 497 bits (257), Expect = e-145
Identities = 315/347 (90%), Gaps = 21/347 (6%)
Strand = Plus / Plus
Query: 1 ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttgagatagcgaggggtctgttttaccttaaagatactttagtattaatgcacaagagtc 243
Query: 61 ttagttccactcgggaggcagaggcaggcggatttctgagttcgaggctagcctggtcta 120
||||||||||| ||||||||||||||||| ||||||||| || ||||| |||||||||||
Sbjct: 244 ttagttccacttgggaggcagaggcaggcagatttctgaatttgaggccagcctggtcta 303
Query: 121 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcgaaaaaccaaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 304 caaagtgagttccagggcagccaagactacacagagaaaccctgtctcaaaaaaccaaaa 363
Query: 181 aaaaaaaaaaaaaaaaaaaaaaa-------------------agagattgagtcttagtt 221
||||||||||||||| | | | | ||||| |||||||||||
Sbjct: 364 aaaaaaaaaaaaaaagagagagagagagagagagagagagagagaga--gagtcttagtt 421
Query: 222 ctactcctacccttgaaagaaatctctttcctggactagggcttttgcaccatctgttgg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctactcctacccttgaaagaaatctctttcctggactagggcttttgcaccatctgttgg 481
Query: 282 atctgttggacatgtttattttatacatacaagagagaaacgttgag 328
|||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 482 atctgttggacatgtttattttatacatacaagagagaaatgttgag 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
