BAC Information

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BAC

Clone NameMSMg01-143E09
Chromosome18 (Build37)
Map Location 57,288,398 - 57,288,740
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143E09.T7 (MSMg01no143_e09.b1)MSMg01-143E09.TJ (MSMg01no143_e09.g1)
ACCAG347669AG347670
length733695
length of high quality
(start - end)
115 (65 - 179)343 (70 - 412)
definitionCHROMAT_FILE: MSMg01no143_e09.b1 PHD_FILE: MSMg01no143_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:47 2005CHROMAT_FILE: MSMg01no143_e09.g1 PHD_FILE: MSMg01no143_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAACGACTACTATATTCCAAAAATCCGCGGAATTC
AAGAGATTCACCTGTCTTTACTTTCGAGGTGCTGGCATTAAAAGCGTGTT
CCACCACCACTGGACTGACATGAAACATTCCTTTTAATTCCTTTTAAATG
TTTTAAACATTTCCTTCCCTCCCTCCCTCCCTAAATAACTCAATAAAAAT
AAAAAACAAAAACAAAATATAATATATTATCACCTAATATAAATTATTTA
TTATATATTAATAAAAAAACCAAAAAAATATAAAAATATATTCCAACATA
AAAAACAACCCTTTTTTTTATTTAAAAACAACAAATAATTAAATATAAAT
ATTAATTTTATTTATTCTACACTATTTTTATTTTGTATTAATATAATATA
AAAAACACAAAACCCCCACATCTTTTTTAAAACTATACAAATATACCACA
CCCAATATTAATATAATAAAATCCACTATCAACAATATATTTTTTCTTAT
AAACCATAAAAAAAATAAACAAAAAAAACTACTAAACATAAAATAAAATA
AATATTAATAAACCACCTTTAATCATACCACTCCCTCCCATATATAATAA
TTTACCGCCTATAAAAATACACAATAAATTCAATTAACACATAAAAAAAA
AATACAACTCCTAAAAAAATAAAAACCAAACAAATAATATAACACACACA
ATTTATATACATATAATATTCATTCCATAATAT
TAGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCCTTTGACAGTCAGGGTTCTTGTTTCTCA
GTAACAGAGGCCAGCTCTGTCTGACTGAACGAAAACAAAACCAAGGGAGA
TGACTGAAGGATTCCAGAAGAGAAGGCAGCTGTGTGACAACGTTTGAAAA
TAAGCAAGGTTTCCTCTAGAGGACTAGAAAGAACCATCAAAGCCATGGTC
TCCGAACAGAAATGGTCTGAGCCGTCTGCGCCTGCTGACATTAATGAACT
TGAACCATTTCTTTCCTCTGTCCTCACTTCAAGCTTTCAAGATCAAAGTC
ACACGAGAGACAATTTATCTGGCTGAACTTAAGTTTCACGTTATATCCTG
AATGTCCTGGGCCACCCCTATTCTTACTCAGTCCTTCAAACTTCTATAGT
GCAGCAGATGCCTGTATTGGATTCCTTCAAGGGTACAGGCTAGAAGGTAG
AGGAAAGGCTCCTAATGAAAATCCGAGCACCCTTGATAAGAGTAAATGAA
CCTTGAGCCATCTGTAAATTACGTCTGACCACGCCCTGACCTGTGAATGT
TGATCTGTGATTCTATTGTGCCATTTGCTGTCAACTAACATAGAGAAATT
TGCGACAATTGGACTTTCCCGTTAATTGACAATCCTGCTATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_e09.g1 MSMg01no143_e09.g1 CHROMAT_FILE:
MSMg01no143_e09.g1 PHD_FILE: MSMg01no143_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:47 2005
         (343 letters)



>mm_chr18_57288138_57288880
          Length = 743

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctttgacagtcagggttcttgtttctcagtaacagaggccagctctgtctgactgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ttcctttgacagtcagggttcttgtttctcagtaacagaggccagctctgtctgactgaa 544

                                                                       
Query: 61  cgaaaacaaaaccaagggagatgactgaaggattccagaagagaaggcagctgtgtgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cgaaaacaaaaccaagggagatgactgaaggattccagaagagaaggcagctgtgtgaca 484

                                                                       
Query: 121 acgtttgaaaataagcaaggtttcctctagaggactagaaagaaccatcaaagccatggt 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 acgtttgaaaataagcaaggtttcctctagaggactaaaaagaaccatcaaagccatggt 424

                                                                       
Query: 181 ctccgaacagaaatggtctgagccgtctgcgcctgctgacattaatgaacttgaaccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctccgaacagaaatggtctgagccgtctgcgcctgctgacattaatgaacttgaaccatt 364

                                                                       
Query: 241 tctttcctctgtcctcacttcaagctttcaagatcaaagtcacacgagagacaatttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctttcctctgtcctcacttcaagctttcaagatcaaagtcacacgagagacaatttatc 304

                                                      
Query: 301 tggctgaacttaagtttcacgttatatcctgaatgtcctgggc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggctgaacttaagtttcacgttatatcctgaatgtcctgggc 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)