BAC Information

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BAC

Clone NameMSMg01-143P16
Chromosome18 (Build37)
Map Location 30,455,281 - 30,455,894
singlet/doubletsinglet
Overlap genePik3c3
Upstream gene4930578E11Rik, LOC666073
Downstream geneLOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143P16.T7 (MSMg01no143_p16.b1)MSMg01-143P16.TJ (MSMg01no143_p16.g1)
ACCAG348177AG348178
length747712
length of high quality
(start - end)
276 (46 - 321)614 (68 - 681)
definitionCHROMAT_FILE: MSMg01no143_p16.b1 PHD_FILE: MSMg01no143_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:40 2005CHROMAT_FILE: MSMg01no143_p16.g1 PHD_FILE: MSMg01no143_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTTTCTCAATAGCTGAATAGTACTCCATTGTGTAAATGTACC
ACGTTTCCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAG
CTTCTGGCTATTATAAATAAGGCTGCTATGAACAGAGTGGAAAATATGTC
CTTATTACATGTTGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTGTAG
CTGGGTCCTCCAGTAGTACTATGTCCAATTTGGATGGGTTGGTCAGCAGG
GGGAGGGGGAATGAGATAGGGAGTNNNNNTNNNTNTNTTTTTTTTTTNTT
TTTTTTTTTTTTCCCCCCCTTTTTTTNTTTTTTTTTTTCCCCTTTTTTTG
TCTCTTTGTTTTGTCCCCCCCCNCGTTTGTGGTTCTTTTTCCGGTTCTCT
TCCTCTCCTTTGCTTTTGCTTCCTCGTCTGGTTGGTTGTGTTTTTTTTCG
GCGTCTTGTTTTCTCGTCGCCGTTTCCCATTCCTTCCTTTATCCGTTCTC
CTTTTCCTCTGCCCTTCTTCGTCGTTTTTTGCCCCGTTCTTTCACTTGTC
TTAACCCTTGTTATGTCTCCCCGCCTCATTCGCCTGCCGTTTTTTTTTTT
TTTTAATTCTTCTTTAATAGTCTTATGTCCATCCCTTTGCATTATTATTA
TATTTAGTCATGACTTTATTTTTTTTTACTCCCTAACTTCCATTATC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGGGAAGTGACTACTGAGATCAACGATTTAC
CTTACAAGCCTTTCCATCTAAGGAAGGCCTCTGTAAGGCTGCCCTGGACT
TTGACGCTGTGCATCTTCACATTACAGTCTCCATCTTCCCATGCAGATTA
CATGACCGCAGCATGCAAGCCATGATTTGTAACCACACGACTCTTCAGTT
AGCACAGCAAGGTTGTTAACTAATTCATGCTCTGGAGGAAGAGCAAGCTC
TCAAAAGCTGGAGTAACATAAAATCCCACTTCCCCTTTCATAGGTATAAA
GGGTAACTGTTAAGATACATCCACAAAAGGTTTCCCAAACCATCAATAAA
TGAGACAAAGCAAAGGCTGAAGAGCTCAAGATGGTCCCTAACTTCACTTT
CACTTCTACCTTAGAAAACTCAACTAAATCAAGAGCCAGCACAGCATGAG
ACTGCAGCACACGGGTTCACTCTCCAGCATGAGATGGCAGTTGCATGATG
CAAACTTTTCCTATCCTAATGCATCTCTGCTCAGCCTCCAGTGGACTCAG
AAACCCTGCTGCACATCCTCTATGCTCTCTAGATCTTCACTGACCCCTCC
CCTTCTGAAGCTTGAACACCAGCATCTCGAGAAGGAGCATGTATACTTCC
GTGNCTCTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_p16.g1 MSMg01no143_p16.g1 CHROMAT_FILE:
MSMg01no143_p16.g1 PHD_FILE: MSMg01no143_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:41 2005
         (614 letters)



>mm_chr18_30455081_30456094
          Length = 1014

 Score = 1102 bits (570), Expect = 0.0
 Identities = 603/614 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgggaagtgactactgagatcaacgatttaccttacaagcctttccatctaaggaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 814 agtgggaagtgactactgagatcaacgatttaccttacaagcctttccaactaaggaagg 755

                                                                       
Query: 61  cctctgtaaggctgccctggactttgacgctgtgcatcttcacattacagtctccatctt 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tctctgtaaggctgccctggactttgacgctgtgcatcttcacattacagtctccatctt 695

                                                                       
Query: 121 cccatgcagattacatgaccgcagcatgcaagccatgatttgtaaccacacgactcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cccatgcagattacatgaccgcagcatgcaagccatgatttgtaaccacacgactcttca 635

                                                                       
Query: 181 gttagcacagcaaggttgttaactaattcatgctctggaggaagagcaagctctcaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 634 gttagcacagcaaggttgttaactaattcatgctctggaggaaaagcaagctctcaaaag 575

                                                                       
Query: 241 ctggagtaacataaaatcccacttcccctttcataggtataaagggtaactgttaagata 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct: 574 ctggagtaacataaaatcccacttcccctttcataggtataaagggtaaccgctaagaca 515

                                                                       
Query: 301 catccacaaaaggtttcccaaaccatcaataaatgagacaaagcaaaggctgaagagctc 360
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 514 catccacaaaaggtttcccaaaccatcaataaatgagacagagcaaaagctgaagagctc 455

                                                                       
Query: 361 aagatggtccctaacttcactttcacttctaccttagaaaactcaactaaatcaagagcc 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aagatggtccctaacttcattttcacttctaccttagaaaactcaactaaatcaagagcc 395

                                                                       
Query: 421 agcacagcatgagactgcagcacacgggttcactctccagcatgagatggcagttgcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agcacagcatgagactgcagcacacgggttcactctccagcatgagatggcagttgcatg 335

                                                                       
Query: 481 atgcaaacttttcctatcctaatgcatctctgctcagcctccagtggactcagaaaccct 540
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acgcaaacttttcctatcctaatgcatctctgctcagcctccagtggactcagaaaccct 275

                                                                       
Query: 541 gctgcacatcctctatgctctctagatcttcactgacccctccccttctgaagcttgaac 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 gctgcacatcctctatgctctctagatcttcactgacccctccccttctggagcttgaac 215

                         
Query: 601 accagcatctcgag 614
           ||||||||||||||
Sbjct: 214 accagcatctcgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)