BAC Information

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BAC

Clone NameMSMg01-144B11
Chromosome18 (Build37)
Map Location 85,062,228 - 85,062,395
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5
Downstream geneFbxo15, 1700034H14Rik, LOC100039765, LOC665382, LOC545269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B11.T7 (MSMg01no144_b11.b1)MSMg01-144B11.TJ (MSMg01no144_b11.g1)
ACCAG348254AG348255
length727751
length of high quality
(start - end)
679 (49 - 727)166 (78 - 243)
definitionCHROMAT_FILE: MSMg01no144_b11.b1 PHD_FILE: MSMg01no144_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:49 2005CHROMAT_FILE: MSMg01no144_b11.g1 PHD_FILE: MSMg01no144_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAAC
CAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACAT
AGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGAT
ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAA
CCTGATAAATAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTCTACACAAACAATAAACAGGCTGAGAAAGAAATT
AGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGG
CGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGT
CTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCA
TGCTCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGCCAAA
AGCAATCTATAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCT
TCAACGAATTAGAAGGAGCAATTTGCA
NNCCGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTTTAGGCACCAGCAGGC
CCAGAAACCAATGCCTTTCCATAGGGAACCCACCAAATGACCTCAGGCTG
TGGACACTTCACCTCCCTCCTTATGTTCCCTCTGCCCCATGTGTATGTTG
TGAGAGTGTATGTGTATGTGTGCGTATGTGGTATATATGTGACTTGCCAT
GAACTTATTCTTGCACCTGCTCTCATTACTTGTTTATCATCTAAGTATAT
TTTAGGCTGTTGACGGTGATTGTTTTTTTTTTCCCACTTTTTGTTCTCGG
TTATAGTCTCTTCCTTTTAGATGATCTGATGTTTATTTCATCGCTTCTTG
TTTATTTTTGTTTTTGCCCCCCCCTCCTACGAATTTTAGTATAATATTTA
TGTCTTGTATCTTTTCTTTTATTTTCTCTTTTCCATTTTATTTTGCTTTT
CTGTTCTTGTTAGTAACTTTCCTTTTCTTTTTTTTTATTCTCTTCATGTT
TTTAACCTTTTTATTTGCTTTTCTGCGTCCTTGTTTTTTTTTCTCTTTCT
GTTTCTCCCCTTTTGCTTCCGCTTTATTCGTCTCTAACTCTCACCTTCTT
CTTTTATGTTCCTTTTTATCCTCCCTTCTTATCTGTTGTTTTATCCCACT
TTACGTCTTCTCCTCTTTTCCTTCGCCTGTTTACGGCCCTTTTTCTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b11.g1 MSMg01no144_b11.g1 CHROMAT_FILE:
MSMg01no144_b11.g1 PHD_FILE: MSMg01no144_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:49 2005
         (166 letters)



>mm_chr18_85062028_85062597
          Length = 570

 Score =  279 bits (144), Expect = 8e-80
 Identities = 161/168 (95%), Gaps = 4/168 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctttttaggcaccagcaggcccagaaaccaatgcctttccatagggaacccaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctttttaggcaccagcaggcccagaaaccaatgcctttccatagggaacccaccaaa 260

                                                                       
Query: 61  tgacctcaggctgtggacacttcacctccctccttatgttccctctgccccatgtgtatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacctcaggctgtggacacttcacctccctccttatgttccctctgccccatgtgtatg 320

                                                           
Query: 121 ttgtgagagtgtatgtgt--atgtgtg--cgtatgtggtatatatgtg 164
           ||||||| |||| |||||  |||||||  |||||||||||| ||||||
Sbjct: 321 ttgtgagtgtgtgtgtgtgtatgtgtgtgcgtatgtggtatgtatgtg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 570
Length adjustment: 8
Effective length of query: 158
Effective length of database: 562
Effective search space:    88796
Effective search space used:    88796
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)