Query= MSMg01no144_e24.b1 MSMg01no144_e24.b1 CHROMAT_FILE:
MSMg01no144_e24.b1 PHD_FILE: MSMg01no144_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:06 2005
(571 letters)
>mm_chr18_28064416_28065386
Length = 971
Score = 1031 bits (533), Expect = 0.0
Identities = 560/571 (98%), Gaps = 5/571 (0%)
Strand = Plus / Plus
Query: 3 ggaattctcagacaacccta---tgaatgagacatagtactgtgtcttctgggtcatata 59
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctcagacaac--taatatgaatgagacatagtactgtgtcttctgggtcatata 259
Query: 60 tttcttgattaaggcccacttcatgcttagattgcctgcttccatatagaggttaaattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttcttgattaaggcccacttcatgcttagattgcctgcttccatatagaggttaaattt 319
Query: 120 tgttgatttcaaatacatgaaaaccaactaatgttgattcttcctcacctttcctcctcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttgatttcaaatacatgaaaaccaactaatgttgattcttcctcacctttcctcctcc 379
Query: 180 cccctctttctctttctctctctctttctttctctgtttatgtgtgcctctgtctctgcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cccctctttctctttctctctctctttctttctctgtttatgtgtgcctctgtctctgcc 439
Query: 240 tttctgtctttctgactctttgtctctctatctctctctgtttctctctctttcactgtg 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 tttctgtctttctgactctttgtctctctgtctctctctgtttctctctctttcactgtg 499
Query: 300 tctgtcttgtgtgagtgtgcgtgcatgcacacgcattcacatgtatcaatacatgacaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgtcttgtgtgagtgtgcgtgcatgcacacgcattcacatgtatcaatacatgacaag 559
Query: 360 gacagtacccccccactctgttgttgactttttcagttcttctcaacttacatcaatgag 419
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacagtagctcgggactctgttgttgactttttcagttcttctcaacttacatcaatgag 619
Query: 420 tagtattgattgagtacatgatgggtatgcctcagtgctaatcataaagtaaaatgtata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tagtattgattgagtacatgatgggtatgcctcagtgctaatcataaagtaaaatgtata 679
Query: 480 aatagtgaatgatccttcgttaggatcagaaagagacaattatatcagcaataaaccttc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aatagtgaatgatccttcgttaggatcagaaagagacaattatatcagcaataaaccttc 739
Query: 540 tgaggacatttcagtagactttgttttctgt 570
|||||||||||||||||||||||||||||||
Sbjct: 740 tgaggacatttcagtagactttgttttctgt 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_e24.g1 MSMg01no144_e24.g1 CHROMAT_FILE:
MSMg01no144_e24.g1 PHD_FILE: MSMg01no144_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:06 2005
(656 letters)
>mm_chr18_28185749_28186803
Length = 1055
Score = 1183 bits (612), Expect = 0.0
Identities = 645/656 (98%), Gaps = 1/656 (0%)
Strand = Plus / Minus
Query: 1 acttctggcatgctctgcacaaatacataagcaatgtattatcagtgccctcaatgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 acttctggcatgctctgcacaaatacataagcaatgtattatcagtgccctcaatgacag 796
Query: 61 gactgtccagatgggattcaattcaaaacccaattgtcttttcctctttgtacacttata 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 795 gactgtccagatgggattcaattcaaaacccaattgtcttttcctctttgtagacttata 736
Query: 121 attggaatactgttgatcagattctgcttttaataaacatggcaaagcagacaggatttt 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 attggaatgctgttgatcagattctgcttttaataaacatggcaaagcagacaggatttt 676
Query: 181 cctgaaacaatttatttgatagaaggcagtggaacatcatatgacagaaatgatagaata 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 675 cctgaaacaatttatttgatagaagacagtggaacatcatatgacagaaatgatagaata 616
Query: 241 agagtggatgctacagcagcccaagggaaagtatgttacagagtcctcgagtgcacacag 300
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 615 agagtggatgctacagcagcccaagggaaagtatgttgcagaatcctcgagtgcacacag 556
Query: 301 caagaggtaggggaagctgcagattatccacagatattactgcccaatatgtacatacat 360
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 555 caagaggtaggggaagctgcagattatccacagatattactgggcaatatgtacatacat 496
Query: 361 agatcgttttctgaaggtggaattgtatcatcatccaataggcaaatgggaaatagtaac 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 495 agatcgctttctgaaggtggaattgtatcatcatccaataggcaaatgggaaatattaac 436
Query: 421 agggatcattaatttaatattcaagcctgagcattgcattgaaaaagaccaaattgtatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agggatcattaatttaatattcaagcctgagcattgcattgaaaaagaccaaattgtatt 376
Query: 481 agagaagcctagaaccggttgacacaaaaacctaatgcaacagcaaataaatctggcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agagaagcctagaaccggttgacacaaaaacctaatgcaacagcaaataaatctggcaga 316
Query: 541 gcaatttaaagctgaaaagaaatagaaagataaatgatgtcataaaagattcacaggggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcaatttaaagctgaaaagaaatagaaagataaatgatgtcataaaagattcacaggggc 256
Query: 601 gtttttttaactgagctgctaaatattttaaaacagaatcaccatggccattttgt 656
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 255 g-ttttttaactgagctgctaaatattttaaaacagaatcaccaaggccattttgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space: 675070
Effective search space used: 675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
