Query= MSMg01no145_a22.b1 MSMg01no145_a22.b1 CHROMAT_FILE:
MSMg01no145_a22.b1 PHD_FILE: MSMg01no145_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
(649 letters)
>mm_chr18_73794183_73795232
Length = 1050
Score = 1174 bits (607), Expect = 0.0
Identities = 639/653 (97%), Gaps = 9/653 (1%)
Strand = Plus / Plus
Query: 2 ggaattctttccagattcac-acatccgtgagtttaagaaaacgagtgagcacaggatga 60
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctttccagatccaagacatccgtgagtttaagaaaacgagtgagcacaggatga 261
Query: 61 tttagttggctttctctttttaatcaaaaacatactttgttacagagttctcaagaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttagttggctttctctttttaatcaaaaacatactttgttacagagttctcaagaaaga 321
Query: 121 ttcaactatttttttttttaagccacagacttcaaccaggcaaaagtctatagaaagaaa 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcaactatttttttt---aagccacagacttcaaccaggcaaaagtctatagaaagaaa 378
Query: 181 gtggtgggcctttagctgaccagtttttcctaagagccaagctaagagtggacccagagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtggtgggcctttagctgaccagtttttcctaagagccaagctaagagtggacccagagt 438
Query: 241 aggagactctcagagctagaagtgtcaccatcaaagctgtccccaacgcccagtcacctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggagactctcagagctagaagtgtcaccatcaaagctgtccccaacgcccagtcacctc 498
Query: 301 ttccacactggatctgcagcacaccagttttcataacctataggaagtcatgcttttaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttccacactggatctgcagcacaccagttttcataacctataggaagtcatgcttttaaa 558
Query: 361 tcacgttagatgcatgcaacaaaaaaaaaacccctccccgcttggagaagtttgccaact 420
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 559 tcacgttagatgcatggaacaaaaaaaaaaccc-tccccgcttggagaagtttgccaact 617
Query: 421 ctatatttagccttttaagtaacccaaacctgtgagtccttctaccaatgacaagcagcc 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 618 ctatatttagccttttaagtaacccaaaccggtgagtccttctaccaatgacaagcagcc 677
Query: 481 ttagcaagagcagctggcttcatcccttcttcacagcggccacagatgtggcctctacca 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 678 ttagcaagagcagctggcttcatcccttcttcacagctgccacagatgtggcctctacca 737
Query: 541 ggactccccacccc----caccccaccccaccccctagaaaggttcccaggtccgtaaaa 596
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggactccccaccccaccccaccccaccccaccccctagaaaggttcccaggtccgtaaaa 797
Query: 597 ataacaaagtcggttattatactcatccaagcaggctggaagaaaactctctg 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ataacaaagtcggttattatactcatccaagcaggctggaagaaaactctctg 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space: 664560
Effective search space used: 664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_a22.g1 MSMg01no145_a22.g1 CHROMAT_FILE:
MSMg01no145_a22.g1 PHD_FILE: MSMg01no145_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:02 2005
(455 letters)
>mm_chr18_73975682_73976537
Length = 856
Score = 828 bits (428), Expect = 0.0
Identities = 449/456 (98%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 1 atgacacttg-tctttgtagctcctccgttcagctggccacaccttgagtttctggcagg 59
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atgacacttgcactttgtagctcctccgttcagctggccacaccttgagtttctggcagg 597
Query: 60 cagggttatgtcaggccacatttatttatacttcctctttactgcggtggtgactctagg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cagggttatgtcaggccacatttatttatacttcctctttactgcggtggtgactctagc 537
Query: 120 agccatgcctatcatcggtcatctaattgcagtctttcctcatgtgccccacccttcaga 179
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 536 agccatgcctatcatcggtcatctaattgcagtctttcctcacgtgccccacccttcaga 477
Query: 180 gccctgtaactgctttgaggggaacaattcgttttcctgtcttctcttaaacttttccta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 476 gccctgtaactgctttgaggggaacaattcgttttcctgtcttctcttaaacttttctta 417
Query: 240 tacatttccatcacctttaattttcttattctttgttgcctcttatttacccttctatct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tacatttccatcacctttaattttcttattctttgttgcctcttatttacccttctatct 357
Query: 300 tttttaaattactgtttctattccttaagtgtaaatagattccattacactcaataattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 356 tttttaaattactgtttctattccttaagtgtaaatagattccattacactgaacaattc 297
Query: 360 ctagcgattacggtttctgaaacaaaaataaatattctccaaaatcctagctgagagtag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctagcgattacggtttctgaaacaaaaataaatattctccaaaatcctagctgagagtag 237
Query: 420 gagcatatatgggaaggggtgtgagtgtgtgtgtgt 455
||||||||||||||||||||||||||||||||||||
Sbjct: 236 gagcatatatgggaaggggtgtgagtgtgtgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
