Query= MSMg01no145_e22.b1 MSMg01no145_e22.b1 CHROMAT_FILE:
MSMg01no145_e22.b1 PHD_FILE: MSMg01no145_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:21 2005
(661 letters)
>mm_chr18_59883359_59884421
Length = 1063
Score = 1011 bits (523), Expect = 0.0
Identities = 620/653 (94%), Gaps = 4/653 (0%)
Strand = Plus / Minus
Query: 12 cttaagcctttcacttga--tctagtgtctcttctgtgtgtcttttctcaggtccgtcct 69
||||||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 863 cttaagccttttacttcatctctagtgtctcttctgtgtgtcttttctcaggtccctcct 804
Query: 70 ttggagttttgtcacactcctcacaaaagtgagtgagtcttacaaaggtaatccacacag 129
||||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 803 ttggagttttggcacactcctcacaaaaatgagtgagtcttacaaaggtgatcaacacag 744
Query: 130 aggtgagggctgtgtgtcaatcactgttcactgcacttactctgctgaaaatgcatctgc 189
||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 aggtgagagctgtctgtcaatcactgttcactccacttactctgctgaaaatgcatctgt 684
Query: 190 agtaacatccactaatgaccaactggatatgagcacagggttttatccactcacctaaa- 248
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 683 agtaacacccagtaatgaccaactggatatgagcacagggttttatccactcacc-aaac 625
Query: 249 gaatgacagatatagaaattgccaggtgctgaaagaagtgatcatggagtcactcttgca 308
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 624 gaatgacagatatagaaattgccaggtgctgaaagaagtgatcaaggagtcactcttgca 565
Query: 309 acctcctcaggtttgctgaccttcgcatgcatgctgctgttttgtggcttctgtgaagag 368
||||||| ||||||||||||||| ||||| |||||||||||| |||||||| |||||||
Sbjct: 564 acctcctgaggtttgctgacctttgcatgtgtgctgctgttttatggcttctatgaagag 505
Query: 369 caaccaggcataatttagctgatacaatgcacttacaatctgtgattgggatgtaagggg 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 504 caaccaggcataatttagctgatacaatgcacttacaatctgtgattgggatgcaagggg 445
Query: 429 aatttttaaaaaaggagaaagaaaagaaaaacaaacctgaatagcaaaagcgactacatc 488
||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct: 444 aatttaaaaaaaaggagaaagaaaagaaaaacgaacctgaagagcaaaagcaactacatt 385
Query: 489 atatcctagaaaaatgtgggtgtagatgttcccaagtaggcactgagagtctttccagaa 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatcctagaaaaatgtgggtgtagatgttcccaagtaggcactgagagtctttccagaa 325
Query: 549 tctctgctgtccagaggatggagtagaacctgtttggtttgctctctgctgatctcacac 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctctgctgtccagaggatggagtagaacctgtttggtttgctctctgctgatctcacac 265
Query: 609 tcctcggtctttgcttacacactcctgagtctctcctcagtaccagtgctcag 661
|||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tccttggcctttgcttacacactcctgagtctctcctcagtaccagtgctcag 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1063
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1053
Effective search space: 685503
Effective search space used: 685503
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_e22.g1 MSMg01no145_e22.g1 CHROMAT_FILE:
MSMg01no145_e22.g1 PHD_FILE: MSMg01no145_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:21 2005
(637 letters)
>mm_chr18_59824267_59825303
Length = 1037
Score = 1226 bits (634), Expect = 0.0
Identities = 636/637 (99%)
Strand = Plus / Plus
Query: 1 tttcataattgtgctcagaggaccaaaggaaacaatgtgtgaataatttgtagaaacaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcataattgtgctcagaggaccaaaggaaacaatgtgtgaataatttgtagaaacaga 260
Query: 61 aaaatactgatttataaagaagaaaatgccaagaaatacattgttcaaaaagaactaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatactgatttataaagaagaaaatgccaagaaatacattgttcaaaaagaactaaat 320
Query: 121 tgaagctctgaacatttgaagtatgataattgaaataaaagttcaaccttaggctgtgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagctctgaacatttgaagtatgataattgaaataaaagttcaaccttaggctgtgac 380
Query: 181 aaatggattgaattagaagaacaaatccattaaccttgaatcaatgggtgttatctaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatggattgaattagaagaacaaatccattaaccttgaatcaatgggtgttatctaatg 440
Query: 241 aagataagaaaaagaaaacattaaataaaatgactagaaccttttgaaaacattagcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagataagaaaaagaaaacattaaataaaatgactagaaccttttgaaaacattagcaca 500
Query: 301 ctataacatacacacatgaaaatagaaaccttcaaaggaaacaaaatagacaaaatgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctataacatacacacatgaaaatagaaaccttcaaaggaaacaaaatagacaaaatgaag 560
Query: 361 aagaaaaaaaaatgtgaagatcaacccactaaaaaatgaaagtttaaaagcaggttgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaaaaaaaatgtgaagatcaacccactaaaaaatgaaagtttaaaagcaggttgaaa 620
Query: 421 caaatgacaagactattacaaagcaaaactttcctataagatggaggcaaaccatgcaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaatgacaagactattacaaagcaaaactttcctataagatggaggcaaaccatgcaaa 680
Query: 481 taatgtctgacctctcaactaaagcaaagaaactgtaagacattagattatgttcaaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taatgtctgacctctcaactaaagcaaagaaactgtaagacattagattatgttcaaaat 740
Query: 541 gcataagtgggtaaaagcctgactgctgagtcctctatatgcataanatattattcaaaa 600
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 gcataagtgggtaaaagcctgactgctgagtcctctatatgcataaaatattattcaaaa 800
Query: 601 ataatgccatctaaaaatacacgaagcttacgaagtc 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataatgccatctaaaaatacacgaagcttacgaagtc 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
