Query= MSMg01no145_f20.b1 MSMg01no145_f20.b1 CHROMAT_FILE:
MSMg01no145_f20.b1 PHD_FILE: MSMg01no145_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:25 2005
(560 letters)
>mm_chr18_62458893_62459851
Length = 959
Score = 996 bits (515), Expect = 0.0
Identities = 548/561 (97%), Gaps = 5/561 (0%)
Strand = Plus / Plus
Query: 2 ggaattcttttcatcttcccttcccccttaatgcaccaacctcagaaaagaggagcggta 61
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttttcgtcatctcttcccccttaatgcaccaacctcagaaaagaggagcggta 261
Query: 62 tcattataggttctatgaaaacatcttggttgcatgacttgtcaggttatagtctgaatc 121
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 262 tcattataggttctatgaaaacatcttggttgcatggcttgtcaggttatagtctgaatc 321
Query: 122 ttttaattctgcaaatgaattgaaattgcaatagaactggtggcaggggctcttgtgtaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttttaattctgcaaatgaattgaaattgcaatagaactggtggcaggggctcttgtgtaa 381
Query: 182 atcttgaaaggtcttaagtaggtaaaatataaaaagggtaggtgttaccagtaagtatcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atcttgaaaggtcttaagtaggtaaaatataaaaagggtaggtgttaccagtaagtatcc 441
Query: 242 taaaaaggatggaaactagtagaagggggttttaggatacttaagtttcagattccatgt 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 taaaaaggatggaaactagtagaagggggttttaggagacttaagtttcagattccatgt 501
Query: 302 gcagactagaggcaaaggcagcaccaagcattttattgtgctccgggtgtgtatgggtca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gcagactagaggcaaaggcagcaccaagcattttattgtgctccgggtgtgtatgggtca 561
Query: 362 gagtcacctcaccc--gcgctgctgcttttcaagtcttgggcttcagctagaatcatcag 419
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gagtcacctca---atgtgctgctgcttttcaagtcttgggcttcagctagaatcatcag 618
Query: 420 aagtgcagagatgattcaataactgaaagttggaattgcttcaaggctcatccatcctca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagtgcagagatgattcaataactgaaagttggaattgcttcaaggctcatccatcctca 678
Query: 480 aggcggcaggttagttctgttgtcatggagcctctggggtagctccaattatcctacagg 539
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 679 aggcggcaggttagtgctgttgtcctggagcctctggggtagctccaattatcctacagg 738
Query: 540 gcctccctaggtatttctgca 560
|||||||||||||||||||||
Sbjct: 739 gcctccctaggtatttctgca 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 959
Length adjustment: 10
Effective length of query: 550
Effective length of database: 949
Effective search space: 521950
Effective search space used: 521950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_f20.g1 MSMg01no145_f20.g1 CHROMAT_FILE:
MSMg01no145_f20.g1 PHD_FILE: MSMg01no145_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:25 2005
(437 letters)
>mm_chr18_62567363_62568199
Length = 837
Score = 799 bits (413), Expect = 0.0
Identities = 431/437 (98%)
Strand = Plus / Minus
Query: 1 cactatggcagaaacagagaagacagaagcggacattcacaggacaaatgcagctgtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cactatggcagaaacagagaagacagaagcggacattcacaggacaaatgcagctgtgct 379
Query: 61 cactacggcaaaattgttctctctctctgatgtttataattcactgagtttcctttctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cactacggcaaaattgttctctctctctgatgtttataattcactgagtttcctttctca 319
Query: 121 aatgcagattctgattttataaatctcaggcgaagtgtaggcatttggcttttacaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aatgcagattctgattttataaatctcaggcgaagtgtaggcatttggcttttacaacct 259
Query: 181 tgtgtgacacagatgctcttttcgcattctcttctattttgtggagggaggatgaaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgtgtgacacagatgctcttttcgcattctcttctattttgtggagggaggatgaaagtg 199
Query: 241 catgtggttgtgcatgcacacagaagccggaggttgaccttagatgctgtcctcaatcgc 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 catgtgggtgtgcatgcacacagaagccggaggttgaccttagatgctgtcctcaatcgc 139
Query: 301 ctctccaccttgtgttctgaaataggatgtctcactcacccccacccccaccagttcagt 360
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 138 ctctccaccttgtgttctgaaataggatgtctcactcaccctgaaccttaccagttcagt 79
Query: 361 tactgtagcgtgctacaaagcccaagtgtcctcctgtatctccttcacccgtgctgagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tactgtagcgtgctacaaagcccaagtgtcctcctgtatctccttcacccgtgctgagat 19
Query: 421 tacaggtgcatgcgact 437
|||||||||||||||||
Sbjct: 18 tacaggtgcatgcgact 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
