Query= MSMg01no145_j11.b1 MSMg01no145_j11.b1 CHROMAT_FILE:
MSMg01no145_j11.b1 PHD_FILE: MSMg01no145_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:43 2005
(628 letters)
>mm_chr18_86253597_86254624
Length = 1028
Score = 1085 bits (561), Expect = 0.0
Identities = 594/605 (98%), Gaps = 2/605 (0%)
Strand = Plus / Minus
Query: 25 aaaaaaaaaagaacttcagtcacatttcagcattttctgcttcaattttttttcattaat 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaaaaaaaaagaacttcagtcacatttcagcattttctgcttcaattttttttcattaat 769
Query: 85 tacagttgaatctaaagcaatccagcacattatttaatcatcatttcttaaagacaaaag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 tacagttgaatctaaagcaatccagcacattatttaatcatcatttcttaaagacaaaag 709
Query: 145 tccatcacacggatatgttctaagtttttatttaccattgataatttaattctatcctca 204
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tccatcatgcggatatgttctaagtttttatttaccattgataatttaattctatcctca 649
Query: 205 ttaatttatttttaagtcctgagaaaggattaataaatctacactataatagacattgtt 264
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 648 ttaatttatttttaagtcctgagaaaggattaataaatctacattataatagacattgtt 589
Query: 265 catgacaatggtggcaataagcatacagaaaatta-aagtggatagacagttcagataaa 323
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 588 catgacaatggtggcaataagcatacagaaaattagaa-tggatagacagttcagataaa 530
Query: 324 aaagtcttttcctatacttttatttttcctgaattgtccttgcatatgaagctctaaagg 383
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 529 aaagccttttcctatacttgtatttttcccgaattgtccttgcatatgaagctctaaagg 470
Query: 384 gtttattttgtctgtttcctaagtacaaactgaggccctgggctcttacctacctcgaga 443
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 gtttattttgtctgtttcctaagtacaaactgaggccctgggctcttacctacttcgaga 410
Query: 444 gtgttagttctggctgaaattaacattacatgcccttagatgaagacactttctaaggat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtgttagttctggctgaaattaacattacatgcccttagatgaagacactttctaaggat 350
Query: 504 ccagcatcaggattgggtctgtgattcagtgggggttttcttgcctagtgttggacatta 563
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ccagcatcaggtttgggtctgtgattcagtgggggttttcttgcctagtgttggacatta 290
Query: 564 ctgggtgccatccccagcattcccaaacaaaacaaactaaaactcataataagaaattaa 623
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctgggtgccatccccagcattccaaaacaaaacaaactaaaactcataataagaaattaa 230
Query: 624 aaaaa 628
|||||
Sbjct: 229 aaaaa 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_j11.g1 MSMg01no145_j11.g1 CHROMAT_FILE:
MSMg01no145_j11.g1 PHD_FILE: MSMg01no145_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:43 2005
(203 letters)
>mm_chr18_86164294_86164896
Length = 603
Score = 277 bits (143), Expect = 4e-79
Identities = 177/203 (87%), Gaps = 23/203 (11%)
Strand = Plus / Plus
Query: 1 atttatattagcaaaggacaatcaggtgcatttaaaagttccaacgagaacaattgcaaa 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atttatattagcaaaggacaatcaggtgcatttaaaagttgcaacgagaacaattgcaaa 260
Query: 61 tgatggctaatatagctcagtaattttgaaggaatgttactaataattaaatcaagaata 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tgatggctaatatagctcagtaattttgaaggaatattactaataattaaatcaagaata 320
Query: 121 agaggcaaaggtatgctgttacatggggctccactgcccagccacctctctgcctacctt 180
|||||| ||||||| |||||||||||||||||||||||
Sbjct: 321 agaggc-----------------------tccactggccagccacctctctgcctacctt 357
Query: 181 catcaaacctgcagaactagaaa 203
|||||||||||||||||||||||
Sbjct: 358 catcaaacctgcagaactagaaa 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space: 116025
Effective search space used: 116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
